PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g025580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 232aa    MW: 26074.3 Da    PI: 7.0526
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g025580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113759123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  Sopen08g025580.1 37 YTCTFCRREFRSAQALGGHMNVH 59
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-63464No hitNo description
Gene3DG3DSA:3.30.160.600.0013562IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00663759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1573764IPR007087Zinc finger, C2H2
PfamPF139121.7E-53760IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MWNAKQATQD DDDSWEVRAF EEDTGNAMGT TWPPRSYTCT FCRREFRSAQ ALGGHMNVHR  60
RDRARLHQAP PQYASNSIHN HNHNHNHISS QNSNSTFLIP TQEFVTNGGL CLLYSLPNPS  120
NTHIFNNPTS RKSCTMNTNS SSSSTLNLSI SPYPTNNNLM SPTTPYPTPT SLNFPINKPN  180
PRICNTSNDD NNNNNNHDYG SNKRDSLIED ELDLELRLGW RSSSSTTTTS SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-133259229superman protein
2l1o_A2e-133259229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084558.11e-170zinc finger protein 10-like
TrEMBLA0A3Q7IN291e-118A0A3Q7IN29_SOLLC; Uncharacterized protein
STRINGSolyc08g077000.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-33C2H2 family protein