PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g022950.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 338aa    MW: 37917.5 Da    PI: 8.6979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g022950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.73.2e-55111371128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhP+deel+++yL +k++++++ ++++i +v+++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke++
  Sopen08g022950.1  11 LPPGFRFHPSDEELITYYLMNKISDSNNFIARAIGDVELNKSEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNSGYWKTTGKDKEIF 103
                       79*************************999999***************99999**************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s + elvg+kktLvfykgrap+gekt+Wvmheyrl
  Sopen08g022950.1 104 S-NLELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 137
                       *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-627159IPR003441NAC domain
PROSITE profilePS5100560.17911159IPR003441NAC domain
PfamPF023651.2E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEGEVNEEID LPPGFRFHPS DEELITYYLM NKISDSNNFI ARAIGDVELN KSEPWDLPGK  60
AKMGEKEWYF FSLRDRKYPT GVRTNRATNS GYWKTTGKDK EIFSNLELVG MKKTLVFYKG  120
RAPRGEKTNW VMHEYRLHSK SSYRTHKQDE WIVCRAFQKS NAGGKRIHVN PYTALDQINP  180
NTICISSQIM MPQVGHNTFQ LAMRKSSSSS AYTMINHPEI QEVLRGVSSS SSSNLMNLHP  240
TLQSQMNYNV GGGNGFTISG LNLNLGGRGG GGGGGATTTQ PGSPPPRPRQ DVSSFHVMMT  300
THDDQAGYGE YMSSGNVMNR FMVLENSSHD LENCWGNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-54816514171NO APICAL MERISTEM PROTEIN
1ut4_B4e-54816514171NO APICAL MERISTEM PROTEIN
1ut7_A4e-54816514171NO APICAL MERISTEM PROTEIN
1ut7_B4e-54816514171NO APICAL MERISTEM PROTEIN
3swm_A3e-54816517174NAC domain-containing protein 19
3swm_B3e-54816517174NAC domain-containing protein 19
3swm_C3e-54816517174NAC domain-containing protein 19
3swm_D3e-54816517174NAC domain-containing protein 19
3swp_A3e-54816517174NAC domain-containing protein 19
3swp_B3e-54816517174NAC domain-containing protein 19
3swp_C3e-54816517174NAC domain-containing protein 19
3swp_D3e-54816517174NAC domain-containing protein 19
4dul_A4e-54816514171NAC domain-containing protein 19
4dul_B4e-54816514171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265273GGRGGGGGG
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085254.10.0NAC domain-containing protein 79-like
SwissprotQ9FLJ21e-78NC100_ARATH; NAC domain-containing protein 100
TrEMBLM1CW690.0M1CW69_SOLTU; Uncharacterized protein
STRINGSolyc08g074300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.23e-93NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]