 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen08g022950.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
NAC |
| Protein Properties |
Length: 338aa MW: 37917.5 Da PI: 8.6979 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen08g022950.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.7 | 3.2e-55 | 11 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhP+deel+++yL +k++++++ ++++i +v+++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke++
Sopen08g022950.1 11 LPPGFRFHPSDEELITYYLMNKISDSNNFIARAIGDVELNKSEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNSGYWKTTGKDKEIF 103
79*************************999999***************99999**************************************** PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
s + elvg+kktLvfykgrap+gekt+Wvmheyrl
Sopen08g022950.1 104 S-NLELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 137
*.999****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MEGEVNEEID LPPGFRFHPS DEELITYYLM NKISDSNNFI ARAIGDVELN KSEPWDLPGK 60
AKMGEKEWYF FSLRDRKYPT GVRTNRATNS GYWKTTGKDK EIFSNLELVG MKKTLVFYKG 120
RAPRGEKTNW VMHEYRLHSK SSYRTHKQDE WIVCRAFQKS NAGGKRIHVN PYTALDQINP 180
NTICISSQIM MPQVGHNTFQ LAMRKSSSSS AYTMINHPEI QEVLRGVSSS SSSNLMNLHP 240
TLQSQMNYNV GGGNGFTISG LNLNLGGRGG GGGGGATTTQ PGSPPPRPRQ DVSSFHVMMT 300
THDDQAGYGE YMSSGNVMNR FMVLENSSHD LENCWGNY
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-54 | 8 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-54 | 8 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-54 | 8 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-54 | 8 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-54 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 3e-54 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 3e-54 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 3e-54 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 3e-54 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 3e-54 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 3e-54 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 3e-54 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 4e-54 | 8 | 165 | 14 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 4e-54 | 8 | 165 | 14 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 265 | 273 | GGRGGGGGG |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
