PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g022790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 316aa    MW: 36343.5 Da    PI: 5.0211
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g022790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.73.5e-091886270
          trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                      Wt +e  +L++  + ++ + +++ +  ++W++   ++ + g++rs +qCk +we++  +y k+k +e+ 
  Sopen08g022790.1 18 WTLHESVTLVNEMKATQIECGNSLASFQKWQSTVHNCNSLGVNRSLNQCKRRWESMLEQYNKVKPWESA 86
                      9999999999999999999****9****************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.2E-81785No hitNo description
PROSITE profilePS500906.4351874IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MERSGGSLRT RSQAAPDWTL HESVTLVNEM KATQIECGNS LASFQKWQST VHNCNSLGVN  60
RSLNQCKRRW ESMLEQYNKV KPWESAYWDS FDEERKRELE LPEQFDFELF NAIARYLSLE  120
GEDGGGAETD PDTDPEAQQV QGNNAFLEIG PKRQRRRTKT KRYKIEERLN PWRRILNENR  180
KYEQSKMGIK HEASIDADLE APRHENSSLE IKRETSSPEE MTELPNLSMV NKVKAEQFHV  240
DNPEELMAAT LRENAEMITA ITEGNTVDDR DCSLADLNNF DAGRLHLIRS QGNQLIDCLG  300
KISDTLIQLC DAIHKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083788.10.0trihelix transcription factor ASR3
TrEMBLA0A3Q7HSF90.0A0A3Q7HSF9_SOLLC; Uncharacterized protein
STRINGSolyc08g069160.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-44sequence-specific DNA binding transcription factors