PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g022250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 196aa MW: 22987.5 Da PI: 10.1493 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.1 | 5.7e-09 | 7 | 137 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikev.d...iykvePwdLpkkvkaeekew...yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 hP d+e++ + L k v gk+++ ++++ +v d i + P+++ +++k++++++ F +r++ + +++ + g+Wk t k k+++ Sopen08g022250.1 7 HPMDKEMM-NNLVKYVMGKPFPGKHTVMDVdDvygIRIFSPSQILESTKGTNNNIrlmITFQNREN---CKVFASK-EAPGFWKCTPKRKSIF 94 8*******.669999*****88766655553422266679***97555555554421133333333...3334444.457************* PP NAM 94 skkgelvglkktLvfy........kgrapkgektdWvmheyrl 128 +++++++g k+ + ++++++ ++++W + ey l Sopen08g022250.1 95 DANKRHIGNIKISWYCyynvddgrDKSSSRLRQSEWQIREYYL 137 **9999998887544345888554345556679********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-9 | 7 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGKSSRHPMD KEMMNNLVKY VMGKPFPGKH TVMDVDDVYG IRIFSPSQIL ESTKGTNNNI 60 RLMITFQNRE NCKVFASKEA PGFWKCTPKR KSIFDANKRH IGNIKISWYC YYNVDDGRDK 120 SSSRLRQSEW QIREYYLTSK YLPQSKVERK NVLLTMMIKT KAAANNDNNN NNNDEKMQRI 180 ILDKQEIMQS LQCLQL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027774642.1 | 1e-145 | uncharacterized protein LOC114078274 | ||||
TrEMBL | A0A3Q7HPK2 | 1e-129 | A0A3Q7HPK2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g068380.2.1 | 1e-130 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14078 | 5 | 10 |