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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopen08g020340.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GATA |
Protein Properties |
Length: 368aa MW: 41405.2 Da PI: 6.8558 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen08g020340.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 56 | 5.3e-18 | 257 | 291 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C t kTp+WR gp g+ktLCnaCG++y++ +l
Sopen08g020340.1 257 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 291
99*****************************9885 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0007623 | Biological Process | circadian rhythm |
GO:0009416 | Biological Process | response to light stimulus |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MPSRVVHQWN SGYYNTEFSS EKQLISDVKN GEHFVVDDLL DLPNDDGMAT DDMLDLTVIG 60 NSTDCSVVDN SCNSSLSGSN HHPQLLGYRD FPEAHLSSEF AVPYEDMAEL EWLSNFVEES 120 FSSNEMHKMQ MVQAMRNRTD SEIHQFIPDP NRASATSNTI FKPEMPVPAK ARSKRSRMAP 180 GNWASRLLVV SPNTTNPDSS MDTISVQDMS SSSESGMIIP SSGKKTVKCS SAPKKKENNI 240 HHVPSNNTGS NSEGRKCLHC ATDKTPQWRT GPLGPKTLCN ACGVRYKSGR LVPEYRPAAS 300 PTFMLTKHSN SHRKVLEIRR QKEVTQVEHQ HQHQHQHQFL PHNMMFDVSN ADDYLIHQHM 360 GPDFRQLI
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