PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g020320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 840aa MW: 92340.8 Da PI: 5.7968 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.2e-19 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Sopen08g020320.1 18 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5678*****************************************************97 PP | |||||||
2 | START | 177.1 | 1.1e-55 | 163 | 371 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 laee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++++++l+v s+g g+++ Sopen08g020320.1 163 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMSTGngGTIE 254 7899******************************************************.8888888888************************ PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++l+a+++l+p Rdf+ Ry+ +++g++vi+++S++++q+ p+ +s+vRa lpSg+li+p+++g+s +++v+h+dl+ ++++++l Sopen08g020320.1 255 LLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVICERSLNNTQNGPSmppVQSFVRADILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVL 347 *********************************************9998899***************************************** PP HHHHHHHHHHHHHHHHHHTXXXXX CS START 182 rslvksglaegaktwvatlqrqce 205 r+l++s++ ++t++a+l+++++ Sopen08g020320.1 348 RPLYESSTLLSQRTTMAALRHLRQ 371 *******************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.694 | 13 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-16 | 15 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-16 | 17 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.26E-16 | 18 | 78 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 19 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 8.37E-6 | 70 | 109 | No hit | No description |
PROSITE profile | PS50848 | 25.755 | 153 | 381 | IPR002913 | START domain |
CDD | cd08875 | 3.34E-80 | 157 | 372 | No hit | No description |
SMART | SM00234 | 9.8E-40 | 162 | 372 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.59E-37 | 163 | 373 | No hit | No description |
Pfam | PF01852 | 5.7E-53 | 163 | 371 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.3E-22 | 163 | 368 | IPR023393 | START-like domain |
Pfam | PF08670 | 3.8E-50 | 697 | 839 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MMAVTSSCKD KFGMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKES SRLQGVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ 120 QTQTAALATT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV 180 EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLEPT RVAEILKDRP SWFRDCRAVD 240 VLNVMSTGNG GTIELLYMQL YAPTTLAPAR DFWLMRYTSV MEDGSLVICE RSLNNTQNGP 300 SMPPVQSFVR ADILPSGYLI RPCEGGGSII HIVDHMDLEP WSVPEVLRPL YESSTLLSQR 360 TTMAALRHLR QISQEISHPT VSGWGRRPAA LRALGQRLSK GFNEAVNGFT DEGWSMLESD 420 GIDDVTILVN SSPSKLMGAN ISYANGFPSM SSAVLCAKAS MLLQNVPPPI LLRFLREHRS 480 EWADSGIDAY SAAAVKAGPC SIPVTRIGSF GGQIILPLAH TIEHEEFMEV IRLESIGHYQ 540 DDMIMPSDIF LLQLCNGVDE NAIGTCAELM FAPIDASFAD DAPLLPSGFR IIPLDSKADA 600 SSPNRTLDLA STLEVGPAGS RPTGDHSKNS GSAKSVMTIA FQFAFEIHLQ ESIAAMACQY 660 VRSIISSVQR VALALSPSRI GSLPGLRSPP GTPEAQTLAR WICQSYRFFL GVELLKSASG 720 GSESILKEIW DHSDALMCCS MKALPVFTFA NEAGLDMLET TLVALQDISL EKIFDDNGRK 780 ALYSELPQIM QQGFACLQGG ICLSSMGRPI SYERAVAWKV LNEEEDAHCI CFMFINWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085523.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A3Q7HQY2 | 0.0 | A0A3Q7HQY2_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400074934 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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