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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g019620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 320aa MW: 35863.4 Da PI: 7.4046 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 2e-07 | 119 | 138 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f++ G+Ck Gd C +aHg Sopen08g019620.1 119 CPDFRK-GQCKKGDACEYAHG 138 ******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 9.4E-5 | 113 | 139 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.056 | 114 | 140 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 119 | 140 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 119 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.155 | 148 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 148 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MMMIGRSPPT VQIPPWDVTD DPTVDVYSPF SGSPDSAFDA LTALQRYLPS NGNDVIFDSD 60 GLDIPVDAFS CDNFRMYEFK VRKCARGRSH DWTECPYAHP GEKARRRDPR KYHYSGTSCP 120 DFRKGQCKKG DACEYAHGVF ECWLHPARYR TQPCKDGTHC RRRVCFFAHT PEQLRVLPQN 180 SPRSFNESSD SFDGSPGRVG YESFSSSPPL ESPPMTPRGL AESMRNMQIG MVRGMRSMQM 240 GSPAFGSPRS PSILRPGFMS MPTTPTRSGA SVFDHCEEEP AMERVESGRD LRARIYAKLS 300 MENSLDSGAP DVGWVSELLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085686.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-118 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A3Q7HQN4 | 0.0 | A0A3Q7HQN4_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065463 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-111 | C3H family protein |
Publications ? help Back to Top | |||
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