PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g018930.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 262aa MW: 29075.2 Da PI: 9.95

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g018930.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	94	138	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky Sopen08g018930.1 94 AWTEEEHRIFLVGLEKLGKGDWRGISSNFVTTRTPTQVASHAQKY 138 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.292	87	143	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-18	88	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-18	90	142	IPR006447	Myb domain, plants
SMART	SM00717	1.2E-10	91	141	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-11	92	138	IPR009057	Homeodomain-like
CDD	cd00167	2.35E-9	94	139	No hit	No description
Pfam	PF00249	1.3E-11	94	138	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGRKCSHCGI TGHNSRTCKT HKDGKLIYDG MMKLFGVKLE VPCSWMKKSF SVDCLSNSSK 60 TSSSMAASNF SYCDISNGYL SDVGRASYKK KGVAWTEEEH RIFLVGLEKL GKGDWRGISS 120 NFVTTRTPTQ VASHAQKYFL RQNSLCKKKR RRSLFDKVGM DKSTMLLFDK MVIKTNISCD 180 KSHTQPEDTN ISMINFTTTS SSKDSKSSSQ QFSNNFTFIN STTFTSHDIS VQDSPLPDLE 240 LTLAVPTTKS TALLAGTTIT VV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	151	KKKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00565	DAP	Transfer from AT5G56840	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	1e-179	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085342.1	0.0	transcription factor MYBS3-like
Swissprot	Q7XC57	1e-44	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A3Q7HMX9	1e-170	A0A3Q7HMX9_SOLLC; Uncharacterized protein
STRING	Solyc08g065380.2.1	1e-171	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3385	21	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	5e-47	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]