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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g017970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 20616.6 Da PI: 6.012 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.9 | 3.3e-31 | 118 | 176 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++ed ++v++tYeg Hnh+ Sopen08g017970.1 118 LDDGYKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKEDSRYVITTYEGVHNHQ 176 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-33 | 104 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-28 | 110 | 178 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.755 | 113 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-36 | 118 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 119 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MGGNFSSSSS MDANNSSANM FDGSFTPLLN SPDSDDHFSN NLINFELSDI FEIDNWPVQQ 60 PDPTLVPHYS NYAANQVVNT RSSTTYHEEP SNNVGSSSER REVKDKVAFR TLSQIEILDD 120 GYKWRKYGKK MVKNSPNPRN YYRCSVEGCP VKKRVERDKE DSRYVITTYE GVHNHQGPSL 180 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 108 | 179 | 7 | 78 | Probable WRKY transcription factor 4 |
2ayd_A | 2e-25 | 106 | 178 | 2 | 74 | WRKY transcription factor 1 |
2lex_A | 2e-25 | 108 | 179 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-153 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245065.1 | 1e-134 | probable WRKY transcription factor 75 | ||||
Refseq | XP_015085209.1 | 1e-134 | probable WRKY transcription factor 75 | ||||
TrEMBL | A0A3Q7HPW5 | 1e-125 | A0A3Q7HPW5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g062490.2.1 | 1e-133 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2124 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 6e-40 | WRKY DNA-binding protein 50 |