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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen08g017970.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 181aa MW: 20616.6 Da PI: 6.012 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen08g017970.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 98.9 | 3.3e-31 | 118 | 176 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++ed ++v++tYeg Hnh+
Sopen08g017970.1 118 LDDGYKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKEDSRYVITTYEGVHNHQ 176
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0050832 | Biological Process | defense response to fungus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 181 aa
Download sequence Send
to blast |
MGGNFSSSSS MDANNSSANM FDGSFTPLLN SPDSDDHFSN NLINFELSDI FEIDNWPVQQ 60 PDPTLVPHYS NYAANQVVNT RSSTTYHEEP SNNVGSSSER REVKDKVAFR TLSQIEILDD 120 GYKWRKYGKK MVKNSPNPRN YYRCSVEGCP VKKRVERDKE DSRYVITTYE GVHNHQGPSL 180 F
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1wj2_A | 2e-25 | 108 | 179 | 7 | 78 | Probable WRKY transcription factor 4 |
2ayd_A | 2e-25 | 106 | 178 | 2 | 74 | WRKY transcription factor 1 |
2lex_A | 2e-25 | 108 | 179 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975447 | 1e-153 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |