PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen08g007600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 416aa MW: 45348.3 Da PI: 5.122 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48 | 2.7e-15 | 214 | 270 | 3 | 59 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v + eN++L k+l +++++ + Sopen08g007600.1 214 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQVRVENSSLLKRLTDISQKYNEA 270 579*****************************************9999999988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.2E-12 | 209 | 268 | No hit | No description |
SMART | SM00338 | 3.7E-19 | 212 | 276 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.254 | 214 | 269 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.6E-13 | 215 | 268 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.73E-11 | 216 | 266 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 219 | 234 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 7.3E-36 | 283 | 405 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 416 aa Download sequence Send to blast |
MDTVFSVDEI ADQLWSSPPP MRLSHDLDSS SATSSSKMMN RSSSEWAFQR FLQEAAAAET 60 TSSSSSQQIK LNHNLIPDQS KPVSSFVSEP PIDSDEHQAF LKRRLDLACA AFALNRASYI 120 KSQDSASLPP EKGSLAANAS LCGSQLPPKG SGQELAEVQD KDAGEPIGIP PLPAVQKKPG 180 IQVRSTTSGS SGEQSEDDEA EGEAETTQST DPTDVKRVRR MLSNRESARR SRRRKQAHLT 240 ELETQVSQVR VENSSLLKRL TDISQKYNEA AVDNRVLKAD VETLRAKVKM AEETVKRVTG 300 LNPLFQAMSE ISTIMMPSFT SSPFDSSADA AVPEHDDLNY PAPENGHMPN HDCRMQNGML 360 DIPPIGNVHQ SSATEALEAN TIDRPSSMQR EASLEHLQKR ICGEASTCGN QGKGEK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 228 | 235 | RRSRRRKQ |
2 | 230 | 235 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT014428 | 0.0 | BT014428.1 Lycopersicon esculentum clone 133746F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084922.1 | 0.0 | light-inducible protein CPRF2-like isoform X1 | ||||
Swissprot | Q99090 | 1e-140 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A3Q7HJU3 | 0.0 | A0A3Q7HJU3_SOLLC; Uncharacterized protein | ||||
STRING | XP_009787496.1 | 1e-178 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2934 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28770.2 | 6e-60 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|