PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g004490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 40071.6 Da PI: 6.2991 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158 | 3.9e-49 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPt+eel+++yL+kk++++k++l +vi+evd++k+ePwd+++k+k +++wy Fs++dkky++g+r+nrat++g+Wkatg+dk Sopen08g004490.1 11 VPPGFRFHPTEEELLHYYLRKKIANEKIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYLFSHKDKKYPSGSRTNRATAAGFWKATGRDK 102 69****************************.9***************964444222455********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + +g++ktLvfykgrap+g k dW+mheyrl Sopen08g004490.1 103 VIYG-NCKRIGMRKTLVFYKGRAPHGLKLDWIMHEYRL 139 ***9.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-55 | 8 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.237 | 11 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-26 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MNLSVNGQSQ VPPGFRFHPT EEELLHYYLR KKIANEKIDL DVIREVDLNK LEPWDIQEKC 60 KIGSTPQNDW YLFSHKDKKY PSGSRTNRAT AAGFWKATGR DKVIYGNCKR IGMRKTLVFY 120 KGRAPHGLKL DWIMHEYRLD DISTPQHQPS LNFCASESAA LEEGWVVCRV FKKKSTLQSS 180 SAVSKTLIHE NTNTHHDGVL DQILMYMGRS SKQQQHEIKS NNIVQQVNNN DNENIQFDNT 240 EDSFLQLPEL VNHHQDCNFN DEMIIMSTGT DDQHYSCMIN NYQENNEAAD HKKNGPTCDW 300 LAMVASQLNG HHLEPPTNNN TTRSNDDDVE FWSYAQSSTF DPLSQFTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 8 | 178 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 8 | 178 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 8 | 178 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 8 | 178 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 8 | 178 | 17 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 8 | 178 | 17 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 8 | 178 | 17 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 8 | 178 | 17 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 8 | 178 | 17 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 8 | 178 | 17 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 8 | 178 | 17 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 8 | 178 | 17 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 8 | 178 | 14 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 8 | 178 | 14 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084688.1 | 0.0 | NAC domain-containing protein 66-like | ||||
Swissprot | Q84WP6 | 4e-99 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | M1A517 | 0.0 | M1A517_SOLTU; Uncharacterized protein | ||||
STRING | Solyc08g008660.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-101 | NAC family protein |