PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g004350.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 232aa    MW: 25988.8 Da    PI: 8.0279
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g004350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.75.4e-382584463
            zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                      + ++cprC+stntkfCyynnyslsqPr+fCk+CrryWt GG+lrn+P+Gg +rk+kksss
  Sopen08g004350.1 25 ALKNCPRCNSTNTKFCYYNNYSLSQPRFFCKNCRRYWTDGGSLRNIPIGGVSRKSKKSSS 84
                      5679****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-221674IPR003851Zinc finger, Dof-type
PfamPF027016.3E-332681IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.812781IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEEMKIPKNT NTRKIRAQQQ QNDEALKNCP RCNSTNTKFC YYNNYSLSQP RFFCKNCRRY  60
WTDGGSLRNI PIGGVSRKSK KSSSINTMKN NIISPKVQDI NNNNNNNNPN NKGVDQDLNL  120
DFSSDFKIIS ELIQVPNNNS FMPIMPNISN PNSIYLFSSN LDHGLIGSSS ISDGGYECHN  180
IIQDLQVCTS TTTSGGILFP FEDLKQVSNT SEQSRDGESS SNGYWDVILG GN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084663.11e-169dof zinc finger protein DOF4.6-like isoform X1
TrEMBLM1A4Z81e-124M1A4Z8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000148431e-125(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.31e-31Dof family protein