PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g003120.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 413aa MW: 46228.4 Da PI: 9.3924

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g003120.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.2	2.5e-19	32	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ + + +++ qC++k+e+l++ry+++k+++ + t + s++ +fd+++a Sopen08g003120.1 32 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAATVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSCpTGRFFSSWFFFDNMDA 123 8*********************************9977766667788999***************99987888899*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-19	31	124	No hit	No description
PROSITE profile	PS50090	6.899	33	93	IPR017877	Myb-like domain
SMART	SM00595	1.1E-9	40	129	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MSSNVDSTVV VAEDAVPEEK PPPPVRRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA 60 DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN 120 MDAMENGTTV AAIRSNNQQI AEKQQAVTAV SGDGYALKTM MDQNFLKLKI NQKNSIDSPP 180 NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGSNKQEHP HDVEFSSGYR MKNGVSMKAK 240 RTGRIIGDVN GFDQGGIRGG GNFVMNPNFD CDEGSEYNGS NASDGFHIRN MGVSSSRRSY 300 NSGNVEQQPN LDSRFSPGLS KFGKKGGGGG GGVGMKRGRD PVEEMVLSIK LLGEGFMKME 360 KMKMEMAKEV EQMRMEMEMK RNEMILESQK QIVEAFVKVL GEVHKNKNAK PES

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MSSNVDSTVV VAEDAVPEEK PPPPVRRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA  60
DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN  120
MDAMENGTTV AAIRSNNQQI AEKQQAVTAV SGDGYALKTM MDQNFLKLKI NQKNSIDSPP  180
NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGSNKQEHP HDVEFSSGYR MKNGVSMKAK  240
RTGRIIGDVN GFDQGGIRGG GNFVMNPNFD CDEGSEYNGS NASDGFHIRN MGVSSSRRSY  300
NSGNVEQQPN LDSRFSPGLS KFGKKGGGGG GGVGMKRGRD PVEEMVLSIK LLGEGFMKME  360
KMKMEMAKEV EQMRMEMEMK RNEMILESQK QIVEAFVKVL GEVHKNKNAK PES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015084064.1	0.0	protein FIP2-like
TrEMBL	A0A0V0IKW1	0.0	A0A0V0IKW1_SOLCH; Putative trihelix transcription factor ASIL2-like
STRING	PGSC0003DMT400052836	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-31	Trihelix family protein