PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002160.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 890aa    MW: 102564 Da    PI: 8.7346
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002160.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-16111198698
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++++  +++++lp  fa+ +g+  ++  +++l+de+ rsW+v+l     + r+ +tkGW++F +an++++gD+  F+l++ +++++v  ++r
  Sopen08g002160.2 111 IHPYAIIRALFYLPLAFARPNGLMRRC--KMILKDEKQRSWSVQL--GEVGPRFAITKGWRQFREANDVQVGDTYKFELIH-NGTTPVAYFHR 198
                       5778888999***********999766..7***************..999999**************************99.56667766665 PP
2B338.81.6e-12234308687
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       +++d+l++ +l++p   +    + +++  +++l+de+ rsW+v l     + ++ +tkGW++F +ang++ gD+  F+l+++
  Sopen08g002160.2 234 VNADALNLFLLSIPIAST--V-LLSRC--KMILRDEKQRSWSVLL--APMGHHTAITKGWRQFREANGVQIGDTYKFELIDN 308
                       567777777777777665..3.23234..7***************..999999*************************9975 PP
3B337.64e-123213961499
                       T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + l +p  f+ ++  g+    ++  l  + g++W vk+  +++    ++++GW++Fv++++L+ g  ++F+++g++ef   v++f++
  Sopen08g002160.2 321 DGLNIPIGFM-KYlRGQ--DYIKHALLKSAGKKWLVKV--NGR----IFKEGWRKFVEDHDLQLGYLLIFRHEGDMEF--DVSIFDS 396
                       5699999999.555555..4567899999*********..544....69***********************999999..9999986 PP
4B344.92.1e-144915661189
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       ++ g l++pk+ a ++g++++++ +l ++de+ rsW+vkl    ++ ++++++GW++F  +   kegD ++F+ + + +
  Sopen08g002160.2 491 FSYGYLRIPKHAAFANGHVTNKKYDLLIRDEKQRSWNVKL--HSCQTQTYIGGGWRKFSADCCFKEGDRIMFEIVTD-G 566
                       677899**********************************..999999*************************7764.3 PP
5B343.26.9e-146567361196
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        ++ +l +p  fa+e+g++ ++   ++++de+ rsW +kl    +   +++++ W eF++an LkegD v+F++ +++e+ lv+k+
  Sopen08g002160.2 656 ISKYLLHVPTLFARENGLDRKC--RVKIRDEQQRSWMFKL--YVTAHNIFIGGIWHEFCSANFLKEGDRVMFEMFSKEEG-LVLKF 736
                       56678999***********777..69999***********..888889*************************7765444.56555 PP
6B351.61.7e-16793872588
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       +++s++ +++ l+lp  f+++ g+ +++  +++l+de+ rsW v+l  +++ +r+v+tkG ++F k ng+++gD+  F+l++++
  Sopen08g002160.2 793 TIKSNTISRSVLYLPMAFIKSTGLMNRR--KIILTDEKQRSWPVQL--TQRVDRFVITKGFQKFMKVNGVQVGDTYKFELIDDR 872
                       67899999**************988555..8***************..9999***************************99753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.642167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-5363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-6463IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-19100198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-18104198IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.112106199IPR003340B3 DNA binding domain
CDDcd100172.19E-13107198No hitNo description
SMARTSM010193.2E-14107200IPR003340B3 DNA binding domain
PfamPF023625.3E-15111198IPR003340B3 DNA binding domain
SMARTSM010190.0019230314IPR003340B3 DNA binding domain
PfamPF023621.0E-10234310IPR003340B3 DNA binding domain
CDDcd100175.25E-9237310No hitNo description
SuperFamilySSF1019367.06E-13252316IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-12256316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.124258319IPR003340B3 DNA binding domain
SMARTSM010192.3E-9315397IPR003340B3 DNA binding domain
CDDcd100176.41E-12319395No hitNo description
PfamPF023624.8E-9321396IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-15321398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-16321399IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.434343397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-14479573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-14479573IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.588481576IPR003340B3 DNA binding domain
SMARTSM010191.4E-5482576IPR003340B3 DNA binding domain
PfamPF023625.8E-12488568IPR003340B3 DNA binding domain
CDDcd100174.61E-8492561No hitNo description
Gene3DG3DSA:2.40.330.104.9E-17644736IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-16644736IPR015300DNA-binding pseudobarrel domain
CDDcd100174.04E-12645740No hitNo description
SMARTSM010191.7E-6646740IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773646742IPR003340B3 DNA binding domain
PfamPF023626.2E-12653737IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-20784879IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-19785880IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-13788879No hitNo description
PROSITE profilePS5086312.788789882IPR003340B3 DNA binding domain
SMARTSM010191.4E-12790882IPR003340B3 DNA binding domain
PfamPF023622.0E-14792872IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MNRRCTITIR DEQRSLTFAL YSSGAHTYIK GKWREFCIAN CLKKGDQIML AILDNGMNPV  60
LRFYDLRTNA SLQLEVKKPN LDAEKVSSRK EVAIVPASPS ANANSQFVSI IHPYAIIRAL  120
FYLPLAFARP NGLMRRCKMI LKDEKQRSWS VQLGEVGPRF AITKGWRQFR EANDVQVGDT  180
YKFELIHNGT TPVAYFHRTR ADASVQPDEK KPNLDVRRVS ARSNEADVPA STCVNADALN  240
LFLLSIPIAS TVLLSRCKMI LRDEKQRSWS VLLAPMGHHT AITKGWRQFR EANGVQIGDT  300
YKFELIDNGT IPIAYFHWFK DGLNIPIGFM KYLRGQDYIK HALLKSAGKK WLVKVNGRIF  360
KEGWRKFVED HDLQLGYLLI FRHEGDMEFD VSIFDSTHCG REYVEYLQVE QEQKQQQEEE  420
EEKGDDDDDE EEEEVEEVVH TTEETSMDFE FKEKSSSSIE SSDEASSHSE ASTDKSFGHS  480
RFICNITACC FSYGYLRIPK HAAFANGHVT NKKYDLLIRD EKQRSWNVKL HSCQTQTYIG  540
GGWRKFSADC CFKEGDRIMF EIVTDGETPI WKFHVVTDAK TPMRKFQGPR FCYWLPWLLC  600
LSGIALCFGS YFRENATEKP KPCVMSSNKD LPDVEAAKDM PWSRPHFICT ITGSCISKYL  660
LHVPTLFARE NGLDRKCRVK IRDEQQRSWM FKLYVTAHNI FIGGIWHEFC SANFLKEGDR  720
VMFEMFSKEE GLVLKFHDLR ANASLQREQK KPNLDVKRVH TRGLRIEPSD VPAPKAQLPT  780
PTSANTNPHF IATIKSNTIS RSVLYLPMAF IKSTGLMNRR KIILTDEKQR SWPVQLTQRV  840
DRFVITKGFQ KFMKVNGVQV GDTYKFELID DRTIHVVYFP CKYAVKDEKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888233.10.0putative B3 domain-containing protein REM15 isoform X1
TrEMBLA0A3Q7HH920.0A0A3Q7HH92_SOLLC; Uncharacterized protein
STRINGSolyc08g006200.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-25B3 family protein