PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g001870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 326aa    MW: 37729 Da    PI: 9.0541
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g001870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.21.4e-2053135286
          trihelix   2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W++qe+++ i++r e+e +++++k    k lWe v++++ erg++rs++qCk+kw+ l +ryk  ++++ ++      ++pyfd+l+
  Sopen08g001870.1  53 WSNQETRDFIAIRGELEMEFSSAKrsNLKSLWEIVAARINERGYRRSAEQCKSKWKTLINRYKGKETSDPDN----GGQFPYFDELH 135
                       ********************986522669************************************9999984....4469*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.68945111IPR017877Myb-like domain
SMARTSM007170.002849113IPR001005SANT/Myb domain
PfamPF138379.1E-2152137No hitNo description
CDDcd122032.94E-1953118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MFGGSNENLG PFTQRLMLPQ HPLHLLPGAG GSSGSGLGGD DEFPKRDERV PPWSNQETRD  60
FIAIRGELEM EFSSAKRSNL KSLWEIVAAR INERGYRRSA EQCKSKWKTL INRYKGKETS  120
DPDNGGQFPY FDELHALFSS NMNNVHRVPI ESEAGSQQAR KRPRGTSRDR SSEEISEDEE  180
GYACESDAVK LGRSNVAPKK KPEKEKRPRT GNAEKASRQA SFGSSINNNT GRVVDNIQEM  240
LKEFFQHQLR IEMQWRETTE KRAREREAFE QEWRSSMEKL ERDRMMIEQS WREREEQRRT  300
REETRAEKRD ALLTTLLNKL IGENHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164ARKRPRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083690.10.0trihelix transcription factor GT-3b-like
TrEMBLM0ZZI80.0M0ZZI8_SOLTU; Uncharacterized protein
STRINGSolyc08g005900.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-28Trihelix family protein