PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g034340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 334aa    MW: 36940.4 Da    PI: 6.8777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g034340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.8e-0789109323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C+ Cgk+F++  +L  H+r+H
  Sopen07g034340.1  89 CKVCGKVFPSMKSLFGHMRSH 109
                       ********************9 PP
2zf-C2H216.13.3e-05246268123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ CgksF ++  L  H ++H
  Sopen07g034340.1 246 YECNTCGKSFATHQALGGHKSSH 268
                       99**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-53764No hitNo description
PROSITE profilePS501578.7254067IPR007087Zinc finger, C2H2
SMARTSM003550.344062IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-84062IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PROSITE profilePS501579.70287114IPR007087Zinc finger, C2H2
SMARTSM003550.003187109IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-988111IPR007087Zinc finger, C2H2
SuperFamilySSF576674.46E-1088109No hitNo description
Gene3DG3DSA:3.30.160.609.2E-489109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576674.46E-10241268No hitNo description
SMARTSM003550.03246268IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.78246273IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-4246268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.2E-9246269IPR007087Zinc finger, C2H2
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGTLLINQIS EKEVLGDRKD DDDVMGFGDE DEISKDNKRR ICRVCKKVFG SGKALGGHMR  60
IHVESCSKKE KSKPREEENC NNDELVPICK VCGKVFPSMK SLFGHMRSHP EREWRGILPP  120
HLKSNDVKKA KKTATAATVP GWSVTAKRGR KPNAEEDEQL QDAVNHLMLL ANGDSIESVV  180
TGHDHTPQEE LEKTNSNSLT SKAENEEFVS EELDRKKKKK KLRHLNSVHD SPASVAVTAT  240
ATPEKYECNT CGKSFATHQA LGGHKSSHNK LRIVIENSND SIIEEAAASS SKLLGDSKLS  300
TTGGRIADFD LNELPPDHDN ELAGNPDYFP FFSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213219DRKKKKK
2213221DRKKKKKKL
3214220RKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8097440.0FJ809744.1 Solanum pennellii chromosome 7 clone C07SpCP034K014.P4H06, complete sequence.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081775.10.0zinc finger protein ZAT2
TrEMBLA0A3Q7HG740.0A0A3Q7HG74_SOLLC; Uncharacterized protein
STRINGSolyc07g066160.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-14C2H2 family protein