PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g030510.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 344aa    MW: 39129.1 Da    PI: 9.5514
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g030510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.74.8e-1517227026128
               NAM  26 kkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.kgrapkge 117
                       ++l++   i+e d+y  +Pw +   +  +ek +y F++ +k ++ + r  r++ +g Wk++ + k+++s+kg++ g k++L +  +g+++   
  Sopen07g030510.1 172 NPLPTLVPIEEEDLYLKDPWVFF-DA-RKEKTIYCFTELKKLKKGNMRFVRTVGDGSWKSQDRGKAIISEKGSVLGYKRSLRYQlRGSEH--- 259
                       44555556**************6.33.357899********9999**************************************8344444... PP

               NAM 118 ktdWvmheyrl 128
                         +W+m+ey+l
  Sopen07g030510.1 260 DGQWLMKEYSL 270
                       579******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF067757.5E-273168IPR009617Seipin family
PROSITE profilePS5100520.335145298IPR003441NAC domain
SuperFamilySSF1019419.42E-20171298IPR003441NAC domain
PfamPF023652.5E-7183270IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019915Biological Processlipid storage
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGFVVSGLTM RRLLEEPIET TKALNFDYTK TSPVAFAPLA SNGLSSPLIS KPKIEDRPIP  60
YNHKLQLTVS LTMPESEYNR KLGIFQVRVD CLSSNGKVTA TSSYPSMLKF KSQPIRLVET  120
AIKSIPLVTG FQSEVQNLKL VINDFTEGFE PTACFKVVIE KRAEYQPQGA DNPLPTLVPI  180
EEEDLYLKDP WVFFDARKEK TIYCFTELKK LKKGNMRFVR TVGDGSWKSQ DRGKAIISEK  240
GSVLGYKRSL RYQLRGSEHD GQWLMKEYSL SAEVKNQLRK QLRENNKENY VLCRVKRKNG  300
EYRKNEEDGP IVQKEAIETE ELNAIISDPL NGVLKPVPTL NLTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082573.21e-124NAC domain-containing protein 1-like
TrEMBLA0A3Q7HH381e-114A0A3Q7HH38_SOLLC; Uncharacterized protein
STRINGSolyc07g062240.1.11e-120(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.24e-10Arabidopsis NAC domain containing protein 87