PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopen07g030480.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 172aa MW: 19846.4 Da PI: 10.2113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g030480.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.8e-11	6	56	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ +Er+RR+++ + +++Lr l+P+ +K s ++ Le+ v+Y+k+L Sopen07g030480.1 6 KVMRRDVERQRRRDMAKLYQRLRLLIPSkY---LMGKRSISDHLEEIVDYVKDL 56 677889********************77...9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.417	4	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-10	5	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-8	6	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-8	6	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MVVEKKVMRR DVERQRRRDM AKLYQRLRLL IPSKYLMGKR SISDHLEEIV DYVKDLKKDI 60 EELESKREKL KEMKNITNIS SLLAPNSSSM KLNDDDEDKI IVKSCNEGVE ISIKGGLSIS 120 KVLKVLMKEG FIVNNCVSST INQRLIHIIQ TKVNTRGDID LALLRSKLMG LF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081892.1	1e-118	transcription factor bHLH120-like
TrEMBL	A0A3Q7HGH9	4e-99	A0A3Q7HGH9_SOLLC; Uncharacterized protein
STRING	Solyc07g062200.1.1	1e-100	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12831	11	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	3e-16	bHLH family protein