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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g027730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 418aa MW: 47113.2 Da PI: 7.6864 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.6e-09 | 132 | 152 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C FaHg Sopen07g027730.1 132 VCSEFRK-GNCSRGDNCEFAHG 152 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.28E-5 | 126 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-6 | 127 | 153 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.45 | 128 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 131 | 154 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-7 | 132 | 152 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8 | 162 | 185 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 162 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MEGLCAELHH HKFHPSHQLY KKSLRDIDIP PRKLLSRRST LSSIDHVVSD VQFMDSPKSE 60 SDAQFQKFLP YNSLDDDDDA DPYSSDHFRM YEFKVRRCTR SRSHDWTDCP FAHPGEKARR 120 RDPRRFHYSG TVCSEFRKGN CSRGDNCEFA HGVFECWLHP TRYRTEACKD GKNCKRKICF 180 FAHTPRQLRV LPPGCYESGL SPKNLNSEKK YRNLNHCCVF CHSVSASPTS TLIGMSHISP 240 PMSPSLSPPL SPANRNQFSS PISRYSDRFG SVESSSSGMC QLDPSGLMSY KDALTELVSS 300 LEAMNVNHEP NSSAAAATHS HSVNFDGNLP WLDVNFNNNN SYDDQQQFLL SPSTPSPSPI 360 SNSRTKFYAR EFPSASPVSS SRLSFVEEPN NNNGTNRFYS DNGLSGGPDL GWVNDLLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081171.1 | 0.0 | zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A3Q7I8Z8 | 0.0 | A0A3Q7I8Z8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g053750.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10595 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 1e-77 | C3H family protein |