PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g027590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 340aa MW: 37686.8 Da PI: 6.191 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32 | 2.7e-10 | 140 | 195 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i eLe+kv++L+ae ++L +l + l+ Sopen07g027590.1 140 KRAKRILANRQSAARSKERKTRYISELERKVQTLQAEATTLSTQLTLFQRDTTGLT 195 9****************************************999887766665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.4E-18 | 136 | 200 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.818 | 138 | 201 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-11 | 140 | 191 | No hit | No description |
Pfam | PF00170 | 6.7E-9 | 140 | 188 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-10 | 140 | 194 | No hit | No description |
CDD | cd14703 | 3.55E-22 | 141 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MQDPSNPNSI KFPTTTFSAA FRPSHHRRAQ SEVNFRLPED LDLVSDPFDA PAGSFEEIGS 60 EDDFFSTYMD IEKLAGGSNP TDIDAGAARV GVESSDGEKK PRHRHSNSVD SSSLLMTESI 120 EAKKAMAPDK LAELWTIDPK RAKRILANRQ SAARSKERKT RYISELERKV QTLQAEATTL 180 STQLTLFQRD TTGLTNENTE LKLRLQAMEQ QAQLRDALNE ALKQEVERLK IATGQISASS 240 DAYSSGMQQI QYNRPAFFPH QTQPGPSESH NIQMSQFHHL QDSISNPRHP LLSGNAQALA 300 DAMQQDPLCR FQGLDISSRG SHLVKTEAPS ISASESSTTF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080651.1 | 0.0 | transcription factor RF2b-like | ||||
Swissprot | O22873 | 1e-107 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A3Q7GV72 | 0.0 | A0A3Q7GV72_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g049040.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3425 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 1e-109 | bZIP family protein |
Publications ? help Back to Top | |||
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