PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g027410.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 311aa MW: 36123.8 Da PI: 5.419

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g027410.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.6e-11	182	226	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L ++ Sopen07g027410.1 182 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQAEVSVLSPRV 226 899*********************************988776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-13	178	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.576	180	232	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.1E-12	182	233	No hit	No description
Pfam	PF00170	9.0E-10	182	225	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-11	182	236	No hit	No description
CDD	cd14703	1.87E-21	183	233	No hit	No description
PROSITE pattern	PS00036	0	185	200	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAHLPPRAPN MTQNWPDFSP HQKIETTTIS HHHHQNNPSW VDEFLDFSSS KRGSHRRSIS 60 DSIAFLEAPM VEECRIIRLS SSGTRTEFDR FDDDQLMSMF NNEDIANNNE HNSIPSSPSD 120 HNSINYEEKK LILHVEEEQQ QQQLKIEPEE VESSCKSDNE QNAAADHDDH VENSSEKIVD 180 PKRIKRILAN RQSAQRSRVR KLQYISELER SVTTLQAEVS VLSPRVAFLD HQRLVLNVDN 240 SVLKQRIAAL AQDKIFKDAH QEALKREIER LREIYYQQNL KKMENDDDDD DHSIKTQQDV 300 NGSEKKEQLV N

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015080925.1	0.0	basic leucine zipper 61
Swissprot	Q9M2K4	1e-103	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A3Q7I8Q9	0.0	A0A3Q7I8Q9_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400024289	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1775	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-101	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]