PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026480.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 351aa    MW: 39841.2 Da    PI: 6.76
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026480.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-072072471055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r RR+++ +++  L +llP++     kK++ +++Le+A +Y+k Lq
  Sopen07g026480.1 207 RLRRQKLSEKIRCLEKLLPWD-----KKMDTSTMLEEAYKYVKFLQ 247
                       88******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.474197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-5203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-10204258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-5207247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.73E-6207250No hitNo description
Gene3DG3DSA:4.10.280.103.9E-9207254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MERKLPLVQP EFNAGEALLL PLMESDEAFI NGMYNGLSYQ SLLSLNLDHS YYGEVKPFSA  60
NSSNFRPSFT NDMLCAGTTA SSQIQQSSGT FHEFSTGDFA WLDKKTEINP DADQKLKYPK  120
LEPVTDNLQL YPYNNEVLLC EPFNYFSNGV GYPSLPDLRC MEQPNYLDFS SSLVTTENRV  180
VEPVRPVSEV MSNLLKNRQP YSSSTTRLRR QKLSEKIRCL EKLLPWDKKM DTSTMLEEAY  240
KYVKFLQAQI NVLQSMPPLV EGGASSDQDR NGKSTSYGLN HEAKAISVFG TLARLNRQQL  300
LQVLLNSPVA QTYLYSKGCC VYSVEQLVQY RTIAQRNAFY RRSLFLSGML S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774006.10.0transcription factor bHLH117
TrEMBLA0A3Q7HC050.0A0A3Q7HC05_SOLLC; Uncharacterized protein
STRINGSolyc07g052930.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112501821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-17bHLH family protein