PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g023530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 227aa    MW: 25943.2 Da    PI: 7.882
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g023530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.25e-302072254
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                      prlrWtp+LHe F+eav+ LGG +kAtPk+i ++m vkgL ++hvkSHLQ+YR
  Sopen07g023530.1 20 PRLRWTPQLHELFIEAVQLLGGGHKATPKRIQQMMAVKGLNISHVKSHLQMYR 72
                      8**************************************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6261676IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-271774IPR009057Homeodomain-like
SuperFamilySSF466892.42E-152076IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-242073IPR006447Myb domain, plants
PfamPF002499.5E-102172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MKNKCCKRIG VRQYKKSSIP RLRWTPQLHE LFIEAVQLLG GGHKATPKRI QQMMAVKGLN  60
ISHVKSHLQM YRNLKERGNL NIVRSVNNFH EETPQFSWSS PQHVCETLLE HGPSKISKQI  120
DPGSDKLPNY KAIINAYIAE NNIYCYDYQE AQGSLSSGMT KEEEEDDGGG GPSSEICEFS  180
HEREINFWPL NDYNHQNSQY DSSTKQVLKS TKDNSHVNLD LSISLCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-182177460Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-182177460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-182177460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-182177460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-182177460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-182177460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-182177460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-182177460Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-130HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081822.21e-171uncharacterized protein LOC107025554
TrEMBLA0A3Q7HA811e-148A0A3Q7HA81_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000024101e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94591325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.12e-26G2-like family protein