PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g023150.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 517aa    MW: 57259.9 Da    PI: 7.0293
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g023150.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543.1e-17335381455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+ellP++     +K +Ka++L +A+eY+ksLq
  Sopen07g023150.1 335 VHNLSERRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 381
                       6*************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.476331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-20334408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-18334385No hitNo description
PfamPF000101.3E-14335381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-20335389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-18337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MNPCLPEWNI ETELPAPHQK KPMGFDHELV ELLWRNGEVV LHSQTHKKQP GYDPNECRQF  60
NKHDQPTIRV AGNQTNLIQD DETVAWLNCP IDDSFDKEFC SPFLSDISTN PHLGEEPDKS  120
IRQSEDNNKV FKFDPLEINH VLPQSHHSGF DPNPMPPPRF HNFGSAQQKH HIVGGDQKGV  180
NFPPPIRSSN VQLGGKEARS NLILQDIKEG SVMTVGSSHC GSNQVDTSRF SSSANRGLSA  240
AMITDYTGKI SPQSDTMDRD TFEPANTSSS SGRSGSSYAR ACNQSTATNS QGHKRKSRDG  300
EEPECQSKAD ELESAGGNKP AQKSGTARRS RAAEVHNLSE RRRRDRINEK MKALQELLPH  360
STKTDKASML DEAIEYLKSL QMQLQMMWMG SGMASMMFPG VQHYISRMGM GMGPPSVPSM  420
HNAMHLARLP LVDPAIPLTQ AAPNNQAAAM CQNSMLNQVN YQRHLQNPNF PDQYASYMGF  480
HPLQGASQPI NIFGLGSHTA QQTQQLPHPT NSNAPAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135820.0BT013582.1 Lycopersicon esculentum clone 132330F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082675.10.0transcription factor PIF4
RefseqXP_027774395.10.0transcription factor PIF4
TrEMBLA0A3Q7H9E80.0A0A3Q7H9E8_SOLLC; Uncharacterized protein
STRINGSolyc07g043580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-47phytochrome interacting factor 4