PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g021120.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRF
Protein Properties Length: 339aa    MW: 38958.4 Da    PI: 9.0672
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g021120.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.6e-2578121144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  Sopen07g021120.1  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121
                       79***************************************986 PP
2QLQ57.93.1e-201145236
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                      +FTa+Q+q+L++Q+l+yKy+++++PvP++Ll  i+
  Sopen07g021120.1 11 PFTANQWQELEHQALIYKYMVSGMPVPADLLYTIR 45
                      8*****************************97775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-111046IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-151144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3421146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94178122IPR014977WRC domain
PfamPF088793.1E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMSSTGRSRF PFTANQWQEL EHQALIYKYM VSGMPVPADL LYTIRRSLDS SLSSKLLIHQ  60
PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EIMTNNNTSS STTRPIIPPT AIPISSINKN TNTCSPTSFS YLTSSSSSTH DYPFHYRPPQ  180
DHTPKFLFES PTTYSRNGMK EEVGEHVFFS SEASGTMRST CGSNSIESDT WQLSPLTMSS  240
SPMKQRTTYS PSQSTAHSYL QLQSLNESSR QNYYYHNDVE KEDHQPKKVM HHFFDEWPPK  300
DNKHSWLDSD DKFSGLSKTQ LSISIPNPSQ DLFIATNEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081067.10.0growth-regulating factor 5-like
TrEMBLA0A3Q7H8B20.0A0A3Q7H8B2_SOLLC; Uncharacterized protein
STRINGSolyc07g041640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-53growth-regulating factor 5