PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g034790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 325aa    MW: 37650.8 Da    PI: 6.7975
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g034790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.77.1e-1940122286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       Wt+qe+  Li+a++e++ +l++g+lk+ +Weev++ + ++ gf   ++s++qC++k+e+l+kry++++           ++++yfd ++
  Sopen06g034790.1  40 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFDLMD 122
                       ***********************************9966667766579*****************98766664......3599999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-1939124No hitNo description
PROSITE profilePS500906.2639100IPR017877Myb-like domain
SMARTSM005952.8E-547129IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MATPSSPPPL LLPPPESNQP QISPNPPIPS PQKKTQPIPW THQETFNLIQ AYQEKWYSLK  60
KGQLKASQWE EVAITVAARC GFDEPSKSAT QCRHKIEKLR KRYRAERLKP YPNSWQYFDL  120
MDRMERGPLP IAAHPVAMVK CQNSNSTSDQ RYYDTDSDEV DVSFMDLRKN KCKSINHIVR  180
GEMGMMGVNV VADNRNVNRM VKDRNFDPMR VMKNSMNEKR KGYFENVGIN NDDDDVDEEA  240
NEEEDDVDGE GSVGGIELAA EIRGFAERFM RMESKKIEMM KETERFRMEM EKRRMEMILE  300
TQRNLIDTIN SVVGSHKKVK VAHEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077571.10.0trihelix transcription factor ASIL1
TrEMBLA0A3Q7H4W80.0A0A3Q7H4W8_SOLLC; Uncharacterized protein
STRINGSolyc06g083430.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124661516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-32Trihelix family protein