PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g033930.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 513aa    MW: 57533 Da    PI: 6.9555
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g033930.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1471.8e-452844692192
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cAea +s + +   ++L++++e++sp gd++ Rla +f++AL+ar a+ ++++   +++++    + ++ l+a++++  ++P+ ++s
  Sopen06g033930.1 284 TSLLTRCAEAAASYNSKTFIEVLNKIREHSSPFGDATPRLAYCFANALEARFAG-GDTTW--ITSKKI---SAADFLKAYQVYITACPFKRMS 370
                       689***************************************************.33222..333333...4899****************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       ++ aN+ I + +++++rvHiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g   +e++eetg+rL+++++++ + ++ ++ ++++
  Sopen06g033930.1 371 NIFANKSIAKLTSESSRVHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLKEYCKRFVLGIKHTT-HTNN 462
                       **********************************************************9**************************999.8888 PP

              GRAS 186 ledlele 192
                       le+ e+e
  Sopen06g033930.1 463 LEKRETE 469
                       8877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.412257513IPR005202Transcription factor GRAS
PfamPF035146.2E-43284469IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MMNTSSHFPG DHRSSDGFEF GHCCGGGGDN DVLCFSSRRS SEEEVVIGSG SDRTVVQGDY  60
FDGVFKYIHQ MLMEDQEDLE NRPCMFQDCI ALQAAEKSFY DALNPPPIHR DFVDDSGNQF  120
QDDYCDAVNQ FAETTFNSDL DNDQCSFFYN TNTICHGVGD GVSVVNGDTS NAINYHDVNE  180
GGIPSCDGNK KHTRDENSES SKGRKSKQLA SNGTEDGNTE EHYDKALLCP GLNPSFYENR  240
SKSATAWDNA AWDKQKSSHI KQSKRGRPRG SKKGVKANEV VDLTSLLTRC AEAAASYNSK  300
TFIEVLNKIR EHSSPFGDAT PRLAYCFANA LEARFAGGDT TWITSKKISA ADFLKAYQVY  360
ITACPFKRMS NIFANKSIAK LTSESSRVHI IDFGILYGFQ WPCIIHGISL RPGGPPKLKI  420
TGIDFPQPGF RPAERVEETG RRLKEYCKRF VLGIKHTTHT NNLEKRETEH KRDTQEFNVV  480
RFPYSTTVTG GFYFTCAPFL NYKYKDHIYR KTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-212834545176GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078928.10.0scarecrow-like protein 11
TrEMBLA0A3Q7H1810.0A0A3Q7H181_SOLLC; Uncharacterized protein
STRINGSolyc06g082530.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-70SCARECROW-like 14