PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Sopen06g033810.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 207aa MW: 22257.2 Da PI: 8.723

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g033810.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.5	3.5e-41	25	124	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqq+++l++e Sopen06g033810.1 25 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLMEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQIQNLQVE 117 7****************************************************************************************** PP DUF260 94 lallkee 100 l+++++e Sopen06g033810.1 118 LNTIRAE 124 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.189	24	125	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-41	25	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MQQQMGRRHV LGPVGGGTTL NNVTPCAACK LLRRRCAEEC PFSPYFSPHE PHKFAAVHKV 60 FGASNVSKLL MEVPVGQRAD AANSLVYEAN VRLRDPVYGC MGAISTLQQQ IQNLQVELNT 120 IRAEILRYKY REATNSLIAS ISTSVAPELP QAPPTPPPPP PPPSVVVVSS SSSSASSTSS 180 NLYTPASSSV ANFSAITNNN ISYFDQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	18	132	4	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	18	132	4	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078806.1	1e-151	LOB domain-containing protein 13
Swissprot	Q9AT61	5e-72	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3Q7H202	1e-148	A0A3Q7H202_SOLLC; Uncharacterized protein
STRING	Solyc06g082430.1.1	1e-148	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	4e-74	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]