PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g033410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 688aa MW: 75057.4 Da PI: 6.3278 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3e-09 | 272 | 292 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd+C +aHg Sopen06g033410.1 272 PCPDFRK-GTCQRGDSCEYAHG 292 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.71E-15 | 31 | 155 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.0E-17 | 33 | 176 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.4E-9 | 71 | 144 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.849 | 75 | 153 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.012 | 75 | 105 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 4.47E-14 | 77 | 172 | No hit | No description |
PROSITE profile | PS50088 | 11.007 | 110 | 145 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0058 | 110 | 142 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.0E-5 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 272 | 294 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.173 | 272 | 294 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-6 | 272 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 300 | 330 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 63 | 302 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.005 | 302 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MCSGSGSEVC STELAMEAKI QKQKELVPDF SLLLELSASD DIRNFQKAVE EEGHDINEVG 60 LWYVRRVGVK KMGYEERTPL MVAATFGSKQ VLSYMLEKGC VDVNQACGSD RATALHCAIS 120 GGSAALLEVV KLLVDASADV NLVDANGKRA VDLISGQSCC LNSRRKILEH LLGGCNTDEV 180 IDQIISEQAE EQLLLTPTVS KFGIEKKEYP VDPSLPDIKN GIYGTDDFRM YIFKVKPCSR 240 AYSHDWTECP FVHPGENARR RDPSKYHYSC VPCPDFRKGT CQRGDSCEYA HGIFECWLHP 300 AQYRTRMCKD ETNCNRRVCF FAHKPEELRP LYPSTGSAVL SPRSYSSGAS SLDITSITPL 360 ALGSPSVMVP PTSTPPMSPS AGASSVGGSL WTCQSSPATP TLQLPISRLK TAINARDMDI 420 GNGYLMQDQL MDELSALSSP SRWNSSSAKA AAFAASLNDR NGEFSRHGGL NPSNLDDIIA 480 NLDAKILSQL QGLSLDAVSP QLQSPKGMQM RQNMNQQHMT SYSSSQSSQS FRTSSSYGID 540 PSNAAATAVL SSRAAAFAKR SQSFIDRSGA GRLPNASAVL SNLSGWGSPD GKLDWGIQKE 600 ELNKLRKSAS FGLRSSGSRF PTTSESSVSD SLVEPDVSWV QSPHSPSMTS RQLATMEDQQ 660 YRLNTSRGSE TMPTWVDQLY MEQEQIVH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080219.1 | 0.0 | zinc finger CCCH domain-containing protein 66-like isoform X1 | ||||
Refseq | XP_015080220.1 | 0.0 | zinc finger CCCH domain-containing protein 66-like isoform X2 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A3Q7H1T7 | 0.0 | A0A3Q7H1T7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g082010.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |