PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g033200.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 372aa    MW: 41777.4 Da    PI: 8.2134
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g033200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.8e-06136159123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y+C+ Cg++F ++ +L++H++  H
  Sopen06g033200.1 136 YPCTLCGEVFQSPIHLEQHQSIkH 159
                       99******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0026136159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076136160IPR007087Zinc finger, C2H2
PROSITE patternPS000280138159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.107.3E-5161277IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563996.33E-13161371No hitNo description
Gene3DG3DSA:3.90.228.101.8E-4307371IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAPTLFRPIF SNFLSLLFLL LHLGCFVFSP SSSSSQNQSS KKRKHSSNLN SSPPPPSTRL  60
KSSTTNAISS SWSYIKRIFS SNKQKIINTQ THNNPSIQSP CSSTRSLQKP ISSDDLINRS  120
EITSDQSFFP LRNDIYPCTL CGEVFQSPIH LEQHQSIKHA ISELTDEDSG NNIVRIIFQT  180
GWVDKEKNPV INRILKIHNS KRILSRFEEY RECVKVKASR NAAVKRDERC IADGNEVLRF  240
HCTTFICELG QNGDSSLCTQ QYCSVCGIIK SGFSHKMDGI SMQPSSWRGH VSVPEGIEEE  300
FGFMNVKRAM LVCRVIAGRV GCDPGYVDKE DSGFDSLVGR ENGSQMRLDE EDELLVFNSR  360
AVLPCFVIVY TV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080163.10.0uncharacterized protein LOC107023861
TrEMBLA0A3Q7H4H90.0A0A3Q7H4H9_SOLLC; Uncharacterized protein
STRINGSolyc06g076820.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-101C2H2 family protein