PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g032210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 139aa MW: 15877.5 Da PI: 10.4919 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 19 | 41 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H Sopen06g032210.1 19 FECKTCKRRFSSFQALGGHRTSH 41 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg+ Fs L H+r+H Sopen06g032210.1 62 HECLICGMEFSMGQALGGHMRRH 84 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.86E-7 | 18 | 84 | No hit | No description |
SMART | SM00355 | 0.47 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.39 | 19 | 41 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.6E-11 | 19 | 43 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.5E-10 | 61 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.12 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MANCLMLLSS IDRDRRNSFE CKTCKRRFSS FQALGGHRTS HKSTIDIGKF LHGKISKKRK 60 VHECLICGME FSMGQALGGH MRRHRAPVNE IEHSAKRIPV LKKSNSNKRI FCVDLNLTPD 120 ENDDFHFWPM APVPPLLSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078584.2 | 1e-99 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A3Q7H3L6 | 2e-96 | A0A3Q7H3L6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g075780.1.1 | 6e-98 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 5e-33 | C2H2 family protein |