 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopen06g030590.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
NAC |
Protein Properties |
Length: 388aa MW: 43786.2 Da PI: 7.8924 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen06g030590.1 | genome | spenn | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 161.4 | 3.5e-50 | 32 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
+ pGfrF+Ptdeel+++yLkkk+eg++ + evi+ev+i k+ePwdLp k+v ++++ew+fFs+r +ky++g++++rat+sgyWkatgk+++v
Sopen06g030590.1 32 MFPGFRFSPTDEELISYYLKKKLEGSDKCV-EVISEVEIWKHEPWDLPaKSVIQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGKERNV 123
579************************777.99***************667777899************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+s +++ +g+k+tLvf++grapkg++t+W+mhey +
Sopen06g030590.1 124 KS-SSNIIGTKRTLVFHTGRAPKGQRTQWIMHEYCM 158
**.999****************************86 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MENEHVSSSS RNETTPRNNA NTEISIATAS SMFPGFRFSP TDEELISYYL KKKLEGSDKC 60 VEVISEVEIW KHEPWDLPAK SVIQSDNEWF FFSPRGRKYP NGSQSKRATE SGYWKATGKE 120 RNVKSSSNII GTKRTLVFHT GRAPKGQRTQ WIMHEYCMIG NTNYQDSMVV CRLRKNSEFH 180 LNDTPRNQRN QLDAIESATA LSGAGQLGSL ELVNVGECCS KEGSSSFHSH SVEQIDSGSE 240 SDKPTKEFSH HDSSGHFKDF DVEDDWFADI MKDDIIKLDD SSLNPRPVSM IPDRPESSGI 300 SNHEAQAAMS SVVPFQGTAN RRLRLVREIV MKCGVKESKP YKAIKKNKVG VGTTSSGRWL 360 RNMFSVEWMR QYVITIFVAT LIFLVMPS
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 2e-45 | 23 | 175 | 11 | 167 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 23 | 175 | 11 | 167 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 23 | 175 | 11 | 167 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 23 | 175 | 11 | 167 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 23 | 175 | 11 | 167 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 23 | 175 | 11 | 167 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 23 | 175 | 11 | 167 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 23 | 175 | 11 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |