PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g030550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TALE
Protein Properties Length: 701aa    MW: 78020.8 Da    PI: 8.0101
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g030550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-094244611954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Sopen06g030550.1 424 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 461
                       554459******************************88 PP
2BELL120.19.6e-39288359172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +rqelq+kkakLl +leeV++rY+qy++q+q+++ssFe+vag+gsak+Yt+lAl+aiS++FrcLkdai+eq+
  Sopen06g030550.1 288 QRQELQMKKAKLLAMLEEVEQRYRQYHHQMQIIVSSFEQVAGVGSAKSYTQLALHAISKQFRCLKDAISEQV 359
                       69********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-59208357IPR006563POX domain
PfamPF075268.5E-49213356IPR006563POX domain
PROSITE profilePS5007112.05402465IPR001356Homeobox domain
SMARTSM003894.2E-10405469IPR001356Homeobox domain
CDDcd000866.87E-12405466No hitNo description
SuperFamilySSF466895.13E-17406471IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-29408471IPR009057Homeodomain-like
PfamPF059202.7E-18422461IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MYYQGTSDNN IQADHHQQHN NHGNSNHNIQ TLYLMNPNSY MQRYTTTDTQ RQQHLQQQQN  60
QQQLLFLNSA PAGGNALSHA NIQHAPLQQQ HFVGVPLPAV SLHDQINHHG LSQRMWNNQD  120
QSQQVIVPSS TVVSATSCGG TTTDLASQLA FQRPIVVSPT PQHRQQQQQG GLSLSLSPQQ  180
QQQISFNNNI SSSSPRTNNV TIRGAMYGSS SNMILGSKYL KAAQELLDEV VNIVGKSNKG  240
DDQKKDNSMN KELMPLVSDV NTNSSGGGGG ESSSRQKNEV AVELTTAQRQ ELQMKKAKLL  300
AMLEEVEQRY RQYHHQMQII VSSFEQVAGV GSAKSYTQLA LHAISKQFRC LKDAISEQVK  360
ATSKSLGEDE GLGGKIEGSR LKFVDHHLRQ QRALQQLGMM QPNAWRPQRG LPERAVSVLR  420
AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEEVKNQEQ  480
NSSNTSGDNK NKETNISAPN EEKQPIITSS LLQDGNTQAE ISTSTISTSP TAGASLHHAH  540
NFSFLGSFNM ENTATTTTVD HIENNAKKPR NHDMHKFSPS SILSSVEMEA KARESTNKGF  600
TNPLMAAYAM GDFGRFDPHD QQMTANFHGN NGVSLTLGLP PSENLVMPVS QQNYLSNELG  660
SRPEIGSHYN RMGYENIDFQ SGNKRFPTQL LPDFVTGNLG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16411469563Homeobox protein Meis2
3k2a_B6e-16411469563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3759660.0AF375966.1 Lycopersicon esculentum bell-like homeodomain protein 2 (BL2) mRNA, complete cds.
GenBankBT0134590.0BT013459.1 Lycopersicon esculentum clone 132117F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079638.10.0BEL1-like homeodomain protein 7
RefseqXP_015079639.10.0BEL1-like homeodomain protein 7
TrEMBLQ7Y0Z70.0Q7Y0Z7_SOLLC; Bell-like homeodomain protein 2
STRINGSolyc06g074120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-94BEL1-like homeodomain 1