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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sopen06g030050.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
MYB |
| Protein Properties |
Length: 502aa MW: 54989.2 Da PI: 5.7925 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen06g030050.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.1 | 8.2e-18 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
Sopen06g030050.1 37 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 84
79******************************************9986 PP
|
| 2 | Myb_DNA-binding | 49.4 | 1.1e-15 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++T+eE+ ++++++++G++ W++ a++++ gRt++++k++w++
Sopen06g030050.1 90 KGAFTPEEERHIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 133
799*******************.*********.***********96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0043068 | Biological Process | positive regulation of programmed cell death |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045926 | Biological Process | negative regulation of growth |
| GO:0048235 | Biological Process | pollen sperm cell differentiation |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 502 aa
Download sequence Send
to blast |
MTSESDDRMT SQDGVDSPSA EEACGGGNTG GGLPLKKGPW TSAEDAILVE YVTKHGEGNW 60
NAVQKHSGLA RCGKSCRLRW ANHLRPDLKK GAFTPEEERH IIELHAKMGN KWARMAAELP 120
GRTDNEIKNY WNTRIKRRQR AGLPIYPSDI CFQSITENKQ NEELGTFSSA DSQYPDFLPM 180
NFEIPAVEFK RLEFNQHLCP PALLNIPTGG ILDIPGRSLL AQGLNSAYYS RSFLSTTPPA 240
KRIRGSESLF SVLNGDCSPS KNDVSFPTCH QHQDDGSLLA QSMGFSSSFN QNLTSDYHPS 300
SLGVIPGSHA LLNGHTSSSE PSWAKKLELP SLQSPIASWG LVTSPLPSLD SVDTLIQSPP 360
TEHTESCNLS PRNSGLLDAV LHESQTMKAS KSILHQENSG DVVDNSCPDL HMTEWGQHGD 420
PISPLGHSAA SVFSEYTPTS GSSSEEPQLV TMPACKVKQE KFDYGPYDGK DDASNLICPR 480
PDFLLESNCF GHMQNTVRSI WY
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
