PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g029130.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 482aa    MW: 54360.1 Da    PI: 5.1793
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g029130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35221142103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sws+++nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+Yg+kkv+ +          weF+++ F +g+k+ll
  Sopen06g029130.1  22 FLSKTYDMVDDRSTDSVVSWSKSNNSFVVWNVPEFSRDILPKYFKHNNFSSFVRQLNIYGYKKVDPDC---------WEFANEGFLRGQKHLL 105
                       9***************************************************************9987.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i r+k +
  Sopen06g029130.1 106 KTISRRKPS 114
                       ******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.3E-3816106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-3417111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-5918111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.0E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSPDGEKTKE GVHEIGNSVP PFLSKTYDMV DDRSTDSVVS WSKSNNSFVV WNVPEFSRDI  60
LPKYFKHNNF SSFVRQLNIY GYKKVDPDCW EFANEGFLRG QKHLLKTISR RKPSQMQVHQ  120
ETASQVQSLS VGSCVEVGKI GIEEEVERLK IDKSIHMEEL VSLRQQQKAT DHRLENVGQR  180
LQLMEQREQQ AMTFLAKALQ SPGFIAELVH QQNEGKRRIP GMNKKRRFPN QEEENYAAKQ  240
VSTLRDRQIV RYQPLINEAA KALLQKLLKT NTSGRLETIV KNTHGFLTNR ARSFENTLET  300
GGISPHISEV TLSQLATSSQ SHLMSDSGFP FNSSLSVIPE IQYSPSLVPG QAKVPQFPEL  360
NALYSKTDNV NPEFSGHGFN TPETHEITNL KRPETGDMPY IETMQDIVDD VVSIIPDGFS  420
MDDVFSDEMP KLPGINDTFW DQILLASPLT GDKDEIGSLA LGDGLSKEED VPEVQESDCD  480
KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-251711124129Heat shock factor protein 1
5d5v_B4e-251711124129Heat shock factor protein 1
5d5v_D4e-251711124129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080267.10.0heat stress transcription factor A-1b-like isoform X1
TrEMBLA0A3Q7H2A90.0A0A3Q7H2A9_SOLLC; Uncharacterized protein
STRINGSolyc06g072750.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-101heat shock factor 3