PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g029090.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 357aa    MW: 39074.3 Da    PI: 7.0145
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g029090.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-09103127126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+lC+ f++ G C+y  +C+FaHg
  Sopen06g029090.1 103 FKTKLCCKFRA-GVCPYVTNCNFAHG 127
                       69*********.*************8 PP
2zf-CCCH18.73.2e-06182202626
                       -SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                       C+ f+    C+yGd+C+F H+
  Sopen06g029090.1 182 CKKFYTEEGCPYGDSCTFLHD 202
                       99999999************7 PP
3zf-CCCH44.33e-14236261126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt++C+ +  tG+C++G++C+FaHg
  Sopen06g029090.1 236 WKTRICNKWETTGYCPFGSKCHFAHG 261
                       8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.19E-8100133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-14100135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.012102128IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7103127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328176204IPR000571Zinc finger, CCCH-type
SMARTSM003560.85176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7177204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-8178204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-17231266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-10232266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422235263IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-9235262IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11236261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDFTGEAGFA GGNVIPDSTA GGGGYDSWGP NFSDQAVWAT EDDYKAWNSG PYCETPSNSS  60
QDGRHSQNRA GSEPPNKKSR NVQDSDARII VTSSSKAIGK MFFKTKLCCK FRAGVCPYVT  120
NCNFAHGIEE LRKPPPNWQE IVAAHENERG VMVELREEHQ IPILSSPDLR GESQRSAKGR  180
HCKKFYTEEG CPYGDSCTFL HDEQSRSRES VAISVTPTVG GFGNNATGAT QKPSNWKTRI  240
CNKWETTGYC PFGSKCHFAH GVAELNKFGG GPAETDGKDY VSVPPELKQG GVPSRATEST  300
VPSTIPALHT DVYHLGQGVQ VQRPTGIADR PGQRFFQKWK GPDKISKIYG DWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140730.0BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079153.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-120C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3Q7H1U20.0A0A3Q7H1U2_SOLLC; Uncharacterized protein
STRINGSolyc06g072720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-117C3H family protein