PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g028890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 288aa    MW: 32296.3 Da    PI: 7.3949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g028890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09134181455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Sopen06g028890.1 134 SHSLAERVRREKISERMKILQALVPGC----DKVTGKALMLDEIINYVQSLQ 181
                       8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.19E-11128185No hitNo description
SuperFamilySSF474592.22E-17128198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEANSNSFHV DSVFHVPIKM SGLLEEPNNI TSSSTLPNCV SQFYLQELSV NMSNNVHEIS  60
HNEPSHVTNK TNSSSLCSTQ SKNVRDGDDG KGQKKRNGNV KREKKTKENK KKAPEEAPTG  120
YVHVRARRGQ ATDSHSLAER VRREKISERM KILQALVPGC DKVTGKALML DEIINYVQSL  180
QNQVEFLSMK LASLNPMYYD FGMDLDTLMV KPDQSWSGLE GPLLENTTSN YPHLDSSTSL  240
MFQQLHLPNS VSQGSGHVLW SGDDQRQKMI INHSELISNN NNLCVPFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-134HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078750.10.0transcription factor bHLH137-like isoform X1
SwissprotQ93W887e-58BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A3Q7H2630.0A0A3Q7H263_SOLLC; Uncharacterized protein
STRINGSolyc06g072520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]