PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g028140.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 603aa    MW: 66879.7 Da    PI: 4.7002
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g028140.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.52e-12259281426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C ++++tGtC+yG +CkF+H+
  Sopen06g028140.1 259 VDCAYYMKTGTCQYGLNCKFNHP 281
                       68********************8 PP
2zf-CCCH28.62.4e-09307329527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +C++++  G CkyG+ Ck++H++
  Sopen06g028140.1 307 ECKYYLTEGGCKYGNACKYSHSK 329
                       6********************95 PP
3zf-CCCH40.16e-13350374226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C+f++rtG CkyG++C+F+H+
  Sopen06g028140.1 350 GEKDCPFYMRTGSCKYGSSCRFHHP 374
                       6789********************9 PP
4zf-CCCH27.26.6e-09485511127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C++f +tG Cky ++CkF+H++
  Sopen06g028140.1 485 PGQPDCSYFIKTGDCKYKSNCKFHHPK 511
                       5789*********************96 PP
5zf-CCCH37.93.1e-12533558227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C+f++r+G+CkyG+ CkF H++
  Sopen06g028140.1 533 GQAVCSFYSRYGICKYGPACKFDHPE 558
                       7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.76255283IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5255282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6257285IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10259281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4261280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497302330IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019302329IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7307329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5307330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5308329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37348376IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-7348375IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10350374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6350376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5354373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.957484512IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-4484511IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5486511IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5489512IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5530556IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112531559IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7531558IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9533558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4536559IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MEAIQSLYMH NLSQPTLDKQ YLGFDPQPPD AASFSSEPNF QNPSRDLPEV EEDDFDDDDE  60
IALQIIFKEV QNLVLNQAFS EARAKGGVYE SAMVKSGSED EKDVRMIGEE LQNLVVDQAF  120
SEERAKGDIN EGNGREEVGN EYGGNRYEDG AGWSENVNVI DVKNEKGGEV ISREWGFDHD  180
EDGDYSWSES GIVVDVENEK GGDAGSKEWG FDDYEDGDLS WTGNEIDVVN ESGSKAGSKE  240
WGFNVDGRRL SYPLRPDAVD CAYYMKTGTC QYGLNCKFNH PSRRQNQWAM EKGKQKDESE  300
ERAGLIECKY YLTEGGCKYG NACKYSHSKG KGAISPVLDF NFLGLPIRQG EKDCPFYMRT  360
GSCKYGSSCR FHHPDPTTVT GNNPSLGYNN GVAPVQSASY SPVSSWSSPR ASNETSPFVP  420
VVYPANQGIL PLSPEWNRFQ APVYPTSEKS LPTPPAFTVK DPATKTNIYS RPQPPWLVEE  480
YPERPGQPDC SYFIKTGDCK YKSNCKFHHP KTQKSLTNPP SVLNEKGLPL RPGQAVCSFY  540
SRYGICKYGP ACKFDHPEHI DNAPPSSPRP AFYQPPFGIS SASDGLRMAR KGNGSGSLVH  600
QSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079900.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM41e-105C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A3Q7H1P50.0A0A3Q7H1P5_SOLLC; Uncharacterized protein
STRINGSolyc06g071860.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-102C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]