PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g027600.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15462.4 Da    PI: 4.6674
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g027600.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-14754350
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      i+  +n+  ++  R++ i  K  EL +LCd++v+ +i +++g+l++++
  Sopen06g027600.1  7 IKRRTNNPKSYQVRKECIKRKSMELATLCDIKVCTVITGPNGELQTWP 54
                      8889999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.652157IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-15682IPR002100Transcription factor, MADS-box
PfamPF003194.4E-10753IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAEEDEIKRR TNNPKSYQVR KECIKRKSME LATLCDIKVC TVITGPNGEL QTWPDDFDAC  60
KQVLDLYSQN LKPEKKYKES STPEPEEEPE PEPEPEPGEE EGEKDLLTLV ESTLAAVNRR  120
IRSLENKGKR KRIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078826.12e-92agamous-like MADS-box protein AGL103
TrEMBLQ53J206e-74Q53J20_SOLLC; SRF-type transcription factor family protein
STRINGSolyc06g071300.1.19e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.17e-11AGAMOUS-like 98