PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g027010.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 338aa MW: 37963.2 Da PI: 7.7753

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g027010.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.3	4.2e-55	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL +kv ++++ + +i +vd++kvePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd+e++ Sopen06g027010.1 16 LPPGFRFHPTDEELITHYLSNKVVDTDFVA-IAIGDVDLNKVEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDREIY 107 79***********************988.78***********888999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++l+g+kktLvfykgrapkgekt+Wv+he+rle Sopen06g027010.1 108 R-GKSLIGMKKTLVFYKGRAPKGEKTNWVIHEFRLE 142 .999***************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.594	16	166	IPR003441	NAC domain
Pfam	PF02365	6.7E-28	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MENYSGVVKD DDQMELPPGF RFHPTDEELI THYLSNKVVD TDFVAIAIGD VDLNKVEPWD 60 LPWKAKMGEK EWYFFCVRDK KYPTGLRTNR ATAAGYWKAT GKDREIYRGK SLIGMKKTLV 120 FYKGRAPKGE KTNWVIHEFR LEGKLSLQNL PKTAKNEWVI CRVFQKSSGG KKIHISGLLK 180 LNSNENEMGN SFLPPLADSA TATASKSSHV HCFSNFLTAQ NNCFPLLSNP MDSYPTTSLV 240 PNTFSCNQIA PFTTNNPASF GVQDPSILLR TSLDSYGLNF KKEDIFNVPQ ETGVLSTDMN 300 TEITSVVSNL EMKRRFLEDQ VPSAGMVGLQ GLDCLWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-54	13	172	17	174	NAC domain-containing protein 19
3swm_B	5e-54	13	172	17	174	NAC domain-containing protein 19
3swm_C	5e-54	13	172	17	174	NAC domain-containing protein 19
3swm_D	5e-54	13	172	17	174	NAC domain-containing protein 19
3swp_A	5e-54	13	172	17	174	NAC domain-containing protein 19
3swp_B	5e-54	13	172	17	174	NAC domain-containing protein 19
3swp_C	5e-54	13	172	17	174	NAC domain-containing protein 19
3swp_D	5e-54	13	172	17	174	NAC domain-containing protein 19
4dul_A	5e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	5e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078073.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3Q7GYH5	0.0	A0A3Q7GYH5_SOLLC; Uncharacterized protein
STRING	Solyc06g069710.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-122	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]