PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g026900.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 413aa    MW: 46551.4 Da    PI: 9.0212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g026900.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16200247355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + hn+ ErrRRdriN+++  L++l+P+a      K +Ka++Le++++Y+k+Lq
  Sopen06g026900.1 200 AVHNQSERRRRDRINEKMKALQKLVPNA-----SKTNKASMLEEVIKYLKQLQ 247
                       57*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-16194251No hitNo description
SuperFamilySSF474591.31E-18194266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-18194267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.962197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-14200247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-16203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSHHTWNFSH QKQEQQVVEK EEEENRYTRG HVHNQQNQVD PMSSKCEVAE LTWENGQVAM  60
HRLGSNLSNE QTKHTWGKAG DTLESIVHQA TFQKQHHSYI MGSDGQNQAN INREKNVSYG  120
AQQTRGVLKR MRSSDSDPQL YIGGISLEHL NARASAKDND ITMITWPCNE DSACHGGSEN  180
KEEERETKSS NPSKRSRRAA VHNQSERRRR DRINEKMKAL QKLVPNASKT NKASMLEEVI  240
KYLKQLQAQI QLISYAKNME QQMMMMSLGM QPPHIQMPLL ATMNMCSSTA GILNNMTSNL  300
APAPYQSLIG GRAPLIYPTS TIPTLFPPFI SPPFAMASSI PSIPSQPINA ESISPKLTKS  360
AAAPDTSFPF NHPYNAYLPQ SMKMEFNNEM AAQYLQQGNQ ENVNIRGQKE RSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197209RAAVHNQSERRRR
2205210ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077955.10.0transcription factor UNE10-like
TrEMBLA0A3Q7H0Y50.0A0A3Q7H0Y5_SOLLC; Uncharacterized protein
STRINGSolyc06g069600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-39bHLH family protein