PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g026630.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 549aa    MW: 60542.9 Da    PI: 7.7409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g026630.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-17254303255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f +Lre++P++    ++K +Ka+ L +++eYI+ Lq
  Sopen06g026630.1 254 RSKHSATEQRRRSKINDRFLKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 303
                       889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-23249320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-19250323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.71252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-14254307No hitNo description
PfamPF000108.0E-15254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MELPQSRPFG TEGRKTTHDF LSLYSPIEQD PRPSQGGHLK THDFFHPIEQ ARKTVGKEEN  60
KVEVEAIEKP PPSAEHILPG GIGTYSISYS QQRFPKPEAN SFAVTQTSST DRDDRNSNCS  120
SYSGSGFALW NESAMKKGKT EKENLAGDRH VVREAGLNIG GGKCTTSLER QSQFSSNHNH  180
NTATLSSHSS PQQPSAMENQ SFIHMITSAK NAQEDDDDEE EEFVVKKESP SPSRGNLSVK  240
VDGKSSDQKP NTPRSKHSAT EQRRRSKIND RFLKLREIIP HSDQKRDKAS FLLEVIEYIQ  300
FLQEKVHKYE GSYQSLDSQP STLPWNKCHS MAQGFIDHSQ GTNSASSPAL IRAAKFDENK  360
IGISATGPVT EQTQEPNRTS SVKESSFLSE LPNRAATLCM QPSTFPFGGH TSIASLKSIL  420
APDAGSLELK SQPQCPSSRL NMANYAVTND KLKGQEVSTE SGTLSISSVY SQRLMNTLKQ  480
ALQSSGVDLS QANMSVQIDL AKRADDRSNA STSNFKGDNI SSRNQPTPLF IDTSTREESV  540
HAFKRLKTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077132.10.0transcription factor BIM1-like isoform X3
TrEMBLA0A1U8FB590.0A0A1U8FB59_CAPAN; transcription factor BIM1-like isoform X1
STRINGSolyc06g069370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.43e-92bHLH family protein