PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g026380.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 290aa MW: 33160.2 Da PI: 6.2605

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g026380.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.8	1.5e-55	6	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhP+deel+++yL +kv++ +++ ++i++vd++k+ePwdLp+k++ +ekewyfFs++d+ky+tg r+nrat++gyWk+tgkdke++ Sopen06g026380.1 6 LPPGFRFHPSDEELITYYLSNKVSDFSFTN-RAIADVDLNKSEPWDLPAKASMGEKEWYFFSQKDRKYPTGLRSNRATEAGYWKTTGKDKEIF 97 79***********************998.88***********999999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + elvg+kktLvfykgrapkgekt+Wvmheyrl Sopen06g026380.1 98 RGGVELVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 132 99999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-61	3	153	IPR003441	NAC domain
PROSITE profile	PS51005	59.423	6	153	IPR003441	NAC domain
Pfam	PF02365	7.5E-29	7	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDEKNLPPGF RFHPSDEELI TYYLSNKVSD FSFTNRAIAD VDLNKSEPWD LPAKASMGEK 60 EWYFFSQKDR KYPTGLRSNR ATEAGYWKTT GKDKEIFRGG VELVGMKKTL VFYKGRAPKG 120 EKTNWVMHEY RLQSILGFKP PKEEWVVCRL FHKNSTVKKS NATSSSQQSD QVESISDAYT 180 LPNFNIPAPH DGEIFNDISL HNYTSEENMN IVNLDPLPSL LLYKAIQLRG NYNHQPMNID 240 PSINIVSSPY GIPSQETISP FGIDFNPTSS SDPLQPQLQQ SYKLDSNIWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-54	1	159	15	174	NAC domain-containing protein 19
3swm_B	1e-54	1	159	15	174	NAC domain-containing protein 19
3swm_C	1e-54	1	159	15	174	NAC domain-containing protein 19
3swm_D	1e-54	1	159	15	174	NAC domain-containing protein 19
3swp_A	1e-54	1	159	15	174	NAC domain-containing protein 19
3swp_B	1e-54	1	159	15	174	NAC domain-containing protein 19
3swp_C	1e-54	1	159	15	174	NAC domain-containing protein 19
3swp_D	1e-54	1	159	15	174	NAC domain-containing protein 19
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078540.1	0.0	NAC domain-containing protein 79
Swissprot	Q9FLR3	3e-78	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A3Q7GXB2	0.0	A0A3Q7GXB2_SOLLC; Uncharacterized protein
STRING	Solyc06g069100.1.1	1e-169	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	9e-96	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]