PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g025840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 307aa    MW: 34847.6 Da    PI: 3.9639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g025840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.62.7e-111257248
               NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                      ppGfrF Ptdee++++yL + v+g+ +    +i+ vd+y+++P  Lp
  Sopen06g025840.1 12 PPGFRFIPTDEEILQYYLFRYVTGNYILP-GIIPLVDLYECDPDYLP 57
                      9*************************777.79*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-15798IPR003441NAC domain
PROSITE profilePS5100510.10811149IPR003441NAC domain
PfamPF023651.1E-41236IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSGEEAWKQQ IPPGFRFIPT DEEILQYYLF RYVTGNYILP GIIPLVDLYE CDPDYLPEGD  60
DIPAQWIMHE YVISCKIVKP SIEDEYYEDI AACRIYKKKP EIKEKTLIDP NIDHNNEEPQ  120
LSVKRKFIAS DPPHDTTMTS NYLCDSQAAL MLDGMRTTYE IGQTSNTKSI PIEISHTSST  180
NLTPFEIDQM SYTKSTLFEI GQTSNTNSTP LEIGQTSNTN STTLEIDQIS NNNSTPLQDN  240
IVPMGEGVFV GPTDQTSTNV YQNQSNEGKI EGTNFDLDLD LDELHNVLHD SSPPDESFEE  300
YWQSLQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773316.11e-150NAC domain-containing protein 2-like
TrEMBLK4C8321e-139K4C832_SOLLC; Uncharacterized protein
STRINGSolyc06g068580.1.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1616255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.13e-13NAC domain containing protein 20