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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen06g022890.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
NAC |
| Protein Properties |
Length: 322aa MW: 37388.4 Da PI: 7.6893 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen06g022890.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168 | 3.1e-52 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+ppGfrFhPt+eel+++yLkkk++ +k+++ evi+e+d++k+ePw+L+++++ ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk
Sopen06g022890.1 9 VPPGFRFHPTEEELLHYYLKKKLSFHKFDM-EVIREIDLNKIEPWELQERCNIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDK 100
69****************************.99**************964444222456********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+ + + +++g++ktLvfy+grap+g+ktdW+mheyrle
Sopen06g022890.1 101 CIRN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 138
***9.8899****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048829 | Biological Process | root cap development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MASSSNGGVP PGFRFHPTEE ELLHYYLKKK LSFHKFDMEV IREIDLNKIE PWELQERCNI 60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSFKKIG MRKTLVFYRG 120
RAPHGQKTDW IMHEYRLEDA DQNQTEDGWV ICRVFKKKNL FKITGNEAAS SIHHHQQPTN 180
NFTHKDNNHD HSPYLLHQLP QHHDQHHDLN YSQIPVATTL APHEYYSHNN NNNNIEVAQN 240
LIKSSSLGYH QHHHHHPHEF SSSGADQSAP CESGLEVASS NDHQWGINID SSKVALGMGF 300
ESNQINHQLP MRGEMDFWSY GK
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-52 | 9 | 159 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-52 | 9 | 159 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-52 | 9 | 159 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-52 | 9 | 159 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-52 | 9 | 159 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 5e-52 | 9 | 159 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 5e-52 | 9 | 159 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 5e-52 | 9 | 159 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 5e-52 | 9 | 159 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 5e-52 | 9 | 159 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 5e-52 | 9 | 159 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 5e-52 | 9 | 159 | 20 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 4e-52 | 9 | 159 | 17 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 4e-52 | 9 | 159 | 17 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
