PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g021670.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 398aa    MW: 44874.9 Da    PI: 7.9786
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g021670.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32208261255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sopen06g021670.2 208 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 261
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-15204261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28206261IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-24208261IPR006447Myb domain, plants
PfamPF002495.7E-7209260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNNK SSSTTTTTTW KAMSSNNNNT DRDEMDLFFL RRALESKPDN  60
NNTLFELSLS NPNYKPSHHT QLINSSHFHP LQNTNFIHQQ NQQQLNIMTP IRGIPLYNQN  120
PLPLSLSHHH NNYPIFAHQT FENTAPTTTP TLPIHSSGYC ISSFSNNSNK TIPNSSPTTI  180
PFHHSNHQGG LMRSRFLSRF PKRTMRAPRM RWTSSLHARF VHAVELLGGH ERATPKSVLE  240
LMDVKDLTLA HVKSHLQMYR TVKTTDRAAV PASSGQSEVF DNGSSGETSE DLMPDMENSR  300
KSDLSDQQGK NSMHLQEIDY HGLWSNSSSR ESWQLHGKHG DYPGNIPSLE KTVKNQHIDL  360
EAKCLSYDRL SGEVSSSSIT ETSPKKPNLE FTLGRPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-17209263458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-17209263458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-17209263458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-17209263458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-17209263458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-17209263458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-17209263458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-17209263458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077402.10.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6164e-77KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A3Q7HSP50.0A0A3Q7HSP5_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000432000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.15e-65G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]