PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g020860.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 306aa    MW: 34255.4 Da    PI: 8.0914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g020860.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016190212123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++C+k+ +++  L +H   H
  Sopen06g020860.1 190 YQCEICNKVLKSSQALGSHKTIH 212
                       9******************9887 PP
2zf-C2H211.90.00069238260123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp Cgk F +   L  H rtH
  Sopen06g020860.1 238 HECPFCGKIFGSGQALGGHKRTH 260
                       79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.7E-5432No hitNo description
PROSITE profilePS5015710.138633IPR007087Zinc finger, C2H2
PfamPF139121.6E-8629IPR007087Zinc finger, C2H2
SMARTSM003550.034628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-10189260No hitNo description
PROSITE profilePS501579.993190217IPR007087Zinc finger, C2H2
PfamPF139124.7E-6190214IPR007087Zinc finger, C2H2
SMARTSM003550.021190212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5235260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-9238260IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263238260IPR007087Zinc finger, C2H2
SMARTSM003550.027238260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSMEKHKCKL CSRIFTSGKA MGGHMRSHLR TLPLPPKTPP QKQDSGGGGG RSESTLSLYS  60
LKEEEEGEEI GEEKHLGYGL RENPKKSSRI VDPEFLDAGS VVHDRDQSET ESTKKPTRRR  120
SKRTRRMFVS DEAAVDDHPE VKKEKSAEFE PVSSFSDTSP EEDIAVCLMM LSKDVWRNSK  180
FRDQNSKEKY QCEICNKVLK SSQALGSHKT IHKKNNSEEQ NQGKSRELRL KNVDEKLHEC  240
PFCGKIFGSG QALGGHKRTH ILSSSITASS SSKVGDSLMD SSSAKFPYGF IDLNMPAPME  300
DEDFSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078061.10.0zinc finger protein ZAT4-like
TrEMBLA0A3Q7GXG30.0A0A3Q7GXG3_SOLLC; Uncharacterized protein
STRINGSolyc06g060740.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-32C2H2-like zinc finger protein