PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g019680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 412aa    MW: 44327.7 Da    PI: 6.6584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g019680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.6e-124973327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      ++ C++++r+G+C yG+rC+F+H++
  Sopen06g019680.1 49 EPDCSYYLRNGICGYGSRCRFNHPR 73
                      799********************96 PP
2zf-CCCH34.34.1e-1198119627
                       -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                       C++++rtG Ck+G++Ck++H++
  Sopen06g019680.1  98 CQYYMRTGMCKFGASCKYHHPR 119
                       ********************96 PP
3zf-CCCH30.75.3e-10141165327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C ++++tG+Ck+G  CkF+H++
  Sopen06g019680.1 141 EKECAHYMKTGHCKFGIICKFNHPQ 165
                       679********************97 PP
4zf-CCCH35.41.8e-11350376127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C++++++G Ck+G++Ck++H+p
  Sopen06g019680.1 350 PGQPECHYYMKYGDCKFGSSCKYHHPP 376
                       5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.694674IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-64673IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-65074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.37192120IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-492119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-597119IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-898119IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7141165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211349377IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5349376IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-9351376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5353377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEMFRRDQPT DDVPVTEQAS SNEETGLEEP MRQLSVGTEA GSYPERPNEP DCSYYLRNGI  60
CGYGSRCRFN HPRDRSLAVG ERRATGGEYP ERAGQYVCQY YMRTGMCKFG ASCKYHHPRQ  120
GEESPSLVIH NIFGYPLRPN EKECAHYMKT GHCKFGIICK FNHPQPTGVQ VPASAAGPFP  180
LPAVVPPPAT YPELQPLPVD SAEQYGIITG NWPVIGPALL PDSYIPDTYG PMLFPPGVVP  240
VSDWTPYLGS TSPVPYQTTQ SAAGAGPVPS QTTHSAAGAG PVPCQTSHSA AGAGPVPSQT  300
TQSAAGAGPI YGHTRLSASA PAYASSYASL TASRGASSSI QDGLAFPERP GQPECHYYMK  360
YGDCKFGSSC KYHHPPESSG SKAALILRAM GLPPDLEEVE HVFLSHCIKY CF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773753.10.0zinc finger CCCH domain-containing protein 5-like
TrEMBLM1D1450.0M1D145_SOLTU; Uncharacterized protein
STRINGSolyc06g054620.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1857844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.12e-88C3H family protein