PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g014030.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 926aa MW: 105675 Da PI: 7.1774

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g014030.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.8e-08	3	32	17	48
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + lG++ W++Ia+++ gRt++++k++++++l Sopen06g014030.1 3 QSLGNR-WSAIAKELL-GRTDNEIKNFYHTHL 32 5799.******9.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.976	1	36	IPR017930	Myb domain
SuperFamily	SSF46689	2.05E-6	2	36	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-12	2	33	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-6	3	32	IPR001005	SANT/Myb domain
CDD	cd00167	2.25E-5	7	32	No hit	No description
Pfam	PF14223	4.6E-14	149	231	No hit	No description
SuperFamily	SSF56672	3.22E-33	447	659	No hit	No description
Pfam	PF07727	7.1E-93	451	680	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	3.22E-33	686	866	No hit	No description
CDD	cd09272	1.01E-69	762	899	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MYQSLGNRWS AIAKELLGRT DNEIKNFYHT HLKKHLGTKV EVKPKSRKKA KQIEMSTQKK 60 PLITNCQNIQ SLDFTNSSSS SSYITFDENY DFLEASNQDN DVTSIVNQVV DENIVILESN 120 PDDTASSSSS VDLHIKDFMD VSVDSSNVVD FWMAEGETIQ DMHTRFTSII NEMYSLGEIV 180 PNGKTVRKLL SVLPETWESK VEAITEARDL DSLAMDELIG NLITYELKKN QEKEIGGKRK 240 ERNLVLNKNA SDDFEDENIA LITKRFTRML KRGQTFQKKT SQKPSENTKD QVCHKCGSPD 300 HFIKFCPLWA LEQKKANFEK VKDIKNDKYI PTNRRMTNQE ADLSTRRAFA AMGDLSEEEF 360 EDGGFENQSL LAIEQSNKYD FLALIAETDS EDDEEDDKQS KVLKIDKGWF SVNQLEIHLI 420 WENMMMRHSR EGLEYEELEK NQSKHAPWAA PSGCKWVYKI KHNAYGSISR YKARLVAKGY 480 NQEYGLDYSE TFSPFIRQEI IRLVLSLAVR NNWLINQLDV SNAFLHGMLD ETIYMTQPPG 540 YVDPRFPQHV CKLQKSLYGL KQAPRAWYTR LKTFLQGLGF TCCVHDTSLF TRHSAHGTVI 600 LLVYVDDIII TGSTAALIQD VTRAMHTTFK MKDLGPLHYF LGMEVSRTGS GLFLHQSKYA 660 RDLLQKAGLE KCTSQPTPMA VSSSTNGADT PFADITHFRS LIGALQYLAI TRPDIQFAVN 720 RVAQRMHQPS EHDYHCLKRI LRYIFGTLGR GLLIRPGDLE LRGFSDSDWA NDKNDRKSTS 780 GFLVFLGPNL ISWCTKKQPK VSRSSTEAEY RALALLAAET MWVTYILREL RATHTVPTLY 840 CDNKSTICVA KNSVLHTRMK HVDTDCLFVR DEVQAGTMTV QYVPTEEQPA DILTKPLPSR 900 QHDYLSSKLP FASAQLSLRG DNNRCY

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MYQSLGNRWS AIAKELLGRT DNEIKNFYHT HLKKHLGTKV EVKPKSRKKA KQIEMSTQKK  60
PLITNCQNIQ SLDFTNSSSS SSYITFDENY DFLEASNQDN DVTSIVNQVV DENIVILESN  120
PDDTASSSSS VDLHIKDFMD VSVDSSNVVD FWMAEGETIQ DMHTRFTSII NEMYSLGEIV  180
PNGKTVRKLL SVLPETWESK VEAITEARDL DSLAMDELIG NLITYELKKN QEKEIGGKRK  240
ERNLVLNKNA SDDFEDENIA LITKRFTRML KRGQTFQKKT SQKPSENTKD QVCHKCGSPD  300
HFIKFCPLWA LEQKKANFEK VKDIKNDKYI PTNRRMTNQE ADLSTRRAFA AMGDLSEEEF  360
EDGGFENQSL LAIEQSNKYD FLALIAETDS EDDEEDDKQS KVLKIDKGWF SVNQLEIHLI  420
WENMMMRHSR EGLEYEELEK NQSKHAPWAA PSGCKWVYKI KHNAYGSISR YKARLVAKGY  480
NQEYGLDYSE TFSPFIRQEI IRLVLSLAVR NNWLINQLDV SNAFLHGMLD ETIYMTQPPG  540
YVDPRFPQHV CKLQKSLYGL KQAPRAWYTR LKTFLQGLGF TCCVHDTSLF TRHSAHGTVI  600
LLVYVDDIII TGSTAALIQD VTRAMHTTFK MKDLGPLHYF LGMEVSRTGS GLFLHQSKYA  660
RDLLQKAGLE KCTSQPTPMA VSSSTNGADT PFADITHFRS LIGALQYLAI TRPDIQFAVN  720
RVAQRMHQPS EHDYHCLKRI LRYIFGTLGR GLLIRPGDLE LRGFSDSDWA NDKNDRKSTS  780
GFLVFLGPNL ISWCTKKQPK VSRSSTEAEY RALALLAAET MWVTYILREL RATHTVPTLY  840
CDNKSTICVA KNSVLHTRMK HVDTDCLFVR DEVQAGTMTV QYVPTEEQPA DILTKPLPSR  900
QHDYLSSKLP FASAQLSLRG DNNRCY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2	3	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.2	2e-13	myb domain protein 15