PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g002870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 532aa MW: 58748.1 Da PI: 5.6219 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.6 | 7e-16 | 302 | 348 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Sopen06g002870.1 302 VHNLSERKRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 348 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-20 | 296 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.012 | 298 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.77E-17 | 301 | 352 | No hit | No description |
Pfam | PF00010 | 2.0E-13 | 302 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-20 | 302 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-18 | 304 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MNYCVVPDFK MDDDYYDIPS AIFNKKSTIA DEEIMELVWQ NGEVIMQSQN QRSVRKSNLF 60 PEQSAVEQTV AVSAPLYMQE DEMNSWLQSP LDDSSFDDFL NTTPSCDAVT SAAAPQGEIG 120 TSKVEIRPPL VPPCSRPIRC TEGELPHRLQ NFGHFSRLSG EAILRNGTTS SSGHSVRAST 180 IVDSNETPVA ARVSENVTPV TAMNVRGREL TATTSGGREV TMACELALTA STSGSGGSVS 240 ARAEPPQPSH MEADTAVDDR KRKSRESDDN EGQSEDVEYE FADARKQVRS STSAKKSRAA 300 EVHNLSERKR RDRINEKMKA LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMATGCSM 360 VPMMYPGIPQ YMPTMGMNMS MGMDMKMGRN RPIISYPPLM PGTAMQNAAA AAQMAPQYPL 420 PAYHLPPFPA PDPSRIPVAN HPDHPRLNSH VGHNISQPRL PNFSDPYYQY FGLQQAQLML 480 PQNQEVEQLS SSKLNSCIEG SAGNHQSGKH SIQMVTFYTS HYCGSFSILF EA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 306 | 311 | ERKRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079221.1 | 0.0 | transcription factor PIF1-like isoform X1 | ||||
TrEMBL | A0A3Q7GMS1 | 0.0 | A0A3Q7GMS1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g008030.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4059 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 6e-47 | phytochrome interacting factor 3-like 5 |